1F0J	Hydrolase	date	May 16, 2000
title	Catalytic Domain Of Human Phosphodiesterase 4b2b
authors	R.X.Xu, A.M.Hassell, D.Vanderwall, M.H.Lambert, W.D.Holmes, M.A.L W.J.Rocque, M.V.Milburn, Y.Zhao, H.Ke, R.T.Nolte
compound		source
Molecule: Phosphodiesterase 4b Chain: A, B Fragment: Catalytic Domain Synonym: Pde4b Ec: 3.1.4.17 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: Monocyte Expression_system: Unidentified Baculovirus Expression_system_taxid: 10469 Expression_system_cell_line: Trichoplusia Ni
symmetry	Space Group: C 2 2 21	R_factor 0.204 R_Free 0.223
crystal cell	length a length b length c angle alpha angle beta angle gamma 104.540 159.580 109.040 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.77 Å
ligand	ARS, MG, ZN	enzyme	Hydrolase E.C.3.1.4.17 BRENDA
related structures	by homologous chain: 1XON, 1XOQ
Gene Ontology	Chain Function Process Component A, B
Primary reference	Atomic structure of PDE4: insights into phosphodiesterase mechanism and specificity., Xu RX, Hassell AM, Vanderwall D, Lambert MH, Holmes WD, Luther MA, Rocque WJ, Milburn MV, Zhao Y, Ke H, Nolte RT, Science 2000 Jun 9;288(5472):1822-5. PMID:10846163

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (130 Kb) [Save to disk] Biological Unit Coordinates (1f0j.pdb1.gz) 65 Kb Biological Unit Coordinates (1f0j.pdb2.gz) 62 Kb LPC: Ligand-Protein Contacts for 1F0J CSU: Contacts of Structural Units for 1F0J Likely Quarternary Molecular Structure file(s) for 1F0J Retrieve 1F0J in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1F0J from S2C, [Save to disk]

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Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1F0J

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1F0J, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1f0ja_, region A [Jmol] [rasmolscript] [script source]     - Domain d1f0jb_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1f0j_A] [1f0j] [1f0j_B] SWISS-PROT database: [Q07343] Domain organization of [PDE4B_HUMAN] by SWISSPFAM Domain found in 1F0J: [HDc ] by SMART

Other resources with information on 1F0J

Community annotation for 1F0J at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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