1F15 Virus date May 18, 2000
title Cucumber Mosaic Virus (Strain Fny)
authors T.J.Smith, E.Chase, T.Schmidt, K.Perry
compound source
Molecule: Coat Protein
Chain: A, B, C
Organism_scientific: Cucumber Mosaic Virus (Strain Fny)
Organism_taxid: 12307
Strain: Fny
symmetry Space Group: P 42 3 2
R_factor 0.246 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
336.000 336.000 336.000 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.20 Å
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceThe structure of cucumber mosaic virus and comparison to cowpea chlorotic mottle virus., Smith TJ, Chase E, Schmidt T, Perry KL, J Virol 2000 Aug;74(16):7578-86. PMID:10906212
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (91 Kb) [Save to disk]
  • Biological Unit Coordinates (1f15.pdb1.gz) 4958 Kb
  • CSU: Contacts of Structural Units for 1F15
  • Likely Quarternary Molecular Structure file(s) for 1F15
  • Retrieve 1F15 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1F15 from S2C, [Save to disk]
  • View 1F15 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1F15
  • VIPERdb: visual, structural and computational analysis of 1F15
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1F15, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1f15a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1f15b_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1f15c_, region C [Jmol] [rasmolscript] [script source]
  • Fold representative 1f15 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1f15_A] [1f15_C] [1f15_B] [1f15]
  • SWISS-PROT database: [P69466]
  • Domain organization of [COAT_CMVFN] by SWISSPFAM
  • Other resources with information on 1F15
  • Community annotation for 1F15 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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