1F2H Apoptosis date May 24, 2000
title Solution Structure Of The N-Terminal Domain Of The Tnfr1 Associated Protein, Tradd.
authors D.Tsao, T.Mcdonaugh, K.Malakian, G.Y.Xu, J.B.Telliez, H.Hsu, L. L.Lin
compound source
Molecule: Tumor Necrosis Factor Receptor Type 1 Associated Death Domain Protein;
Chain: A
Fragment: N-Terminal Domain
Synonym: Tradd, Tnfr1-Associated Death Domain Protein
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Prsetb
methodSolution NMR
related structures by homologous chain: 1F3V

Primary referenceSolution structure of N-TRADD and characterization of the interaction of N-TRADD and C-TRAF2, a key step in the TNFR1 signaling pathway., Tsao DH, McDonagh T, Telliez JB, Hsu S, Malakian K, Xu GY, Lin LL, Mol Cell 2000 Jun;5(6):1051-7. PMID:10911999
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1F2H
  • Original NMR restraints for 1F2H from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1F2H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1F2H from S2C, [Save to disk]
  • View 1F2H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1F2H
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1F2H, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1f2ha_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1f2h from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1f2h_A] [1f2h]
  • SWISS-PROT database: [Q15628]
  • Domain organization of [TRADD_HUMAN] by SWISSPFAM
  • Other resources with information on 1F2H
  • Community annotation for 1F2H at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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