1F2T Replication date May 29, 2000
title Crystal Structure Of Atp-Free Rad50 Abc-Atpase
authors K.P.Hopfner, A.Karcher, D.S.Shin, L.Craig
compound source
Molecule: Rad50 Abc-Atpase
Chain: A
Fragment: N-Terminal Domain
Engineered: Yes
Organism_scientific: Pyrococcus Furiosus
Organism_taxid: 2261
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet29

Molecule: Rad50 Abc-Atpase
Chain: B
Fragment: C-Terminal Domain
Engineered: Yes

Organism_scientific: Pyrococcus Furiosus
Organism_taxid: 2261
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet29
symmetry Space Group: P 21 21 21
R_factor 0.187 R_Free 0.231
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.570 67.080 70.060 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
related structures by homologous chain: 1F2U
Gene
Ontology
ChainFunctionProcessComponent
B


Primary referenceStructural biology of Rad50 ATPase: ATP-driven conformational control in DNA double-strand break repair and the ABC-ATPase superfamily., Hopfner KP, Karcher A, Shin DS, Craig L, Arthur LM, Carney JP, Tainer JA, Cell 2000 Jun 23;101(7):789-800. PMID:10892749
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk]
  • Biological Unit Coordinates (1f2t.pdb1.gz) 54 Kb
  • CSU: Contacts of Structural Units for 1F2T
  • Likely Quarternary Molecular Structure file(s) for 1F2T
  • Retrieve 1F2T in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1F2T from S2C, [Save to disk]
  • View 1F2T in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1F2T
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1F2T, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1f2t.1, region A:,B [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1f2t_B] [1f2t] [1f2t_A]
  • SWISS-PROT database: [P58301]
  • Domain organization of [RAD50_PYRFU] by SWISSPFAM
  • Other resources with information on 1F2T
  • Community annotation for 1F2T at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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