1F3C Contractile Protein date Jun 02, 2000
title Refined Solution Structure Of 8kda Dynein Light Chain (Dlc8)
authors J.S.Fan, Q.Zhang, H.Tochio, M.Zhang
compound source
Molecule: Dynein
Chain: A, B
Fragment: 8kda Light Chain
Synonym: Protein Inhibitor Of Neuronal Nitric Oxide Synthas
Engineered: Yes
 Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
note 1F3C supersedes 1BKQ
related structures by homologous chain: 1F95, 1PWK
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • enzyme inhibitor activity
  • intraciliary retrograde tran...

    • Primary referenceStructural basis of diverse sequence-dependent target recognition by the 8 kDa dynein light chain., Fan J, Zhang Q, Tochio H, Li M, Zhang M, J Mol Biol 2001 Feb 9;306(1):97-108. PMID:11178896
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (964 Kb) [Save to disk]
  • Biological Unit Coordinates (1f3c.pdb1.gz) 48 Kb
  • CSU: Contacts of Structural Units for 1F3C
  • Original NMR restraints for 1F3C from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1F3C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1F3C from S2C, [Save to disk]
    • View 1F3C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1F3C
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1F3C, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1f3ca_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1f3cb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1f3c_A] [1f3c] [1f3c_B]
  • SWISS-PROT database: [P63170]
  • Domain organization of [DYL1_RAT] by SWISSPFAM
  • Domain found in 1F3C: [Dynein_light ] by SMART
    • Other resources with information on 1F3C
  • Community annotation for 1F3C at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 1F3C from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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