1F3U Transcription date Jun 06, 2000
title Crystal Structure Of The Rap3074 Interaction Domains Of Hum
authors F.Gaiser, S.Tan, T.J.Richmond
compound source
Molecule: Transcription Initiation Factor Iif, Beta Subunit
Chain: A, C, E, G
Fragment: Residues 2-119
Synonym: Transcription Initiation Factor Rap30
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pet3a

Molecule: Transcription Initiation Factor Iif, Alpha Subuni
Chain: B, D, F, H
Fragment: Residues 2-172
Synonym: Transcription Initiation Factor Rap74
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pet3a
symmetry Space Group: P 1
R_factor 0.225 R_Free 0.260
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.015 72.290 82.266 104.51 93.32 104.32
method X-Ray Diffractionresolution 1.70 Å
note 1F3U is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, E, C, G


F, B, H, D


Primary referenceNovel dimerization fold of RAP30/RAP74 in human TFIIF at 1.7 A resolution., Gaiser F, Tan S, Richmond TJ, J Mol Biol 2000 Oct 6;302(5):1119-27. PMID:11183778
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (188 Kb) [Save to disk]
  • Biological Unit Coordinates (1f3u.pdb1.gz) 47 Kb
  • Biological Unit Coordinates (1f3u.pdb2.gz) 49 Kb
  • Biological Unit Coordinates (1f3u.pdb3.gz) 51 Kb
  • Biological Unit Coordinates (1f3u.pdb4.gz) 46 Kb
  • CSU: Contacts of Structural Units for 1F3U
  • Likely Quarternary Molecular Structure file(s) for 1F3U
  • Structure Factors (846 Kb)
  • Retrieve 1F3U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1F3U from S2C, [Save to disk]
  • Re-refined 1f3u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1F3U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1F3U
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1F3U, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1f3ua_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1f3ub_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1f3uc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1f3ud_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1f3ue_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1f3uf_, region F [Jmol] [rasmolscript] [script source]
        - Domain d1f3ug_, region G [Jmol] [rasmolscript] [script source]
        - Domain d1f3uh_, region H [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1f3u_G] [1f3u] [1f3u_A] [1f3u_D] [1f3u_C] [1f3u_F] [1f3u_E] [1f3u_H] [1f3u_B]
  • SWISS-PROT database: [P35269] [P13984]
  • Domain organization of [T2FA_HUMAN] [T2FB_HUMAN] by SWISSPFAM
  • Other resources with information on 1F3U
  • Community annotation for 1F3U at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science