1F54 Transport Protein date Jun 13, 2000
title Solution Structure Of The Apo N-Terminal Domain Of Yeast Calmodulin
authors H.Ishida, K.Takahashi, K.Nakashima, Y.Kumaki, M.Nakata, K.Hikichi, M.Yazawa
compound source
Molecule: Calmodulin
Chain: A
Fragment: N-Terminal Domain
Engineered: Yes
Other_details: Intracellular Calcium Sensor
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-30b(+) And Pic10
methodSolution NMR
related structures by homologous chain: 1DMO, 1F55

Primary referenceSolution structures of the N-terminal domain of yeast calmodulin: Ca2+-dependent conformational change and its functional implication., Ishida H, Takahashi K, Nakashima K, Kumaki Y, Nakata M, Hikichi K, Yazawa M, Biochemistry 2000 Nov 14;39(45):13660-8. PMID:11076504
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (590 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1F54
  • Retrieve 1F54 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1F54 from S2C, [Save to disk]
  • View 1F54 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1F54
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1F54, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1f54a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1f54 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1f54] [1f54_A]
  • SWISS-PROT database: [P06787]
  • Domain organization of [CALM_YEAST] by SWISSPFAM
  • Domain found in 1F54: [EFh ] by SMART
  • Other resources with information on 1F54
  • Community annotation for 1F54 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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