1F5J Hydrolase date Jul 26, 2000
title Crystal Structure Of Xynb, A Highly Thermostable Beta-1,4-Xy From Dictyoglomus Thermophilum Rt46b.1, At 1.8 A Resolution
authors A.A.Mccarthy, E.N.Baker
compound source
Molecule: Beta-1,4-Xylanase
Chain: A, B
Ec: 3.2.1.8
Engineered: Yes
Organism_scientific: Dictyoglomus Thermophilum
Organism_taxid: 14
Strain: Rt46b.1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pjla602
symmetry Space Group: P 43
R_factor 0.185 R_Free 0.222
crystal
cell
length a length b length c angle alpha angle beta angle gamma
91.290 91.290 44.930 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand SO4 enzyme Hydrolase E.C.3.2.1.8 BRENDA
related structures by homologous chain: 1H4H, 1QH7
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure of XynB, a highly thermostable beta-1,4-xylanase from Dictyoglomus thermophilum Rt46B.1, at 1.8 A resolution., McCarthy AA, Morris DD, Bergquist PL, Baker EN, Acta Crystallogr D Biol Crystallogr 2000 Nov;56 ( Pt 11):1367-75. PMID:11053833
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk]
  • Biological Unit Coordinates (1f5j.pdb1.gz) 35 Kb
  • Biological Unit Coordinates (1f5j.pdb2.gz) 35 Kb
  • LPC: Ligand-Protein Contacts for 1F5J
  • CSU: Contacts of Structural Units for 1F5J
  • Likely Quarternary Molecular Structure file(s) for 1F5J
  • Structure Factors (386 Kb)
  • Retrieve 1F5J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1F5J from S2C, [Save to disk]
  • Re-refined 1f5j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1F5J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1F5J
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1F5J, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1f5ja_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1f5jb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1f5j] [1f5j_B] [1f5j_A]
  • SWISS-PROT database: [P77853]
  • Domain organization of [P77853_DICTH] by SWISSPFAM
  • Other resources with information on 1F5J
  • Community annotation for 1F5J at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science