1F6L VARIABLE LIGHT CHAIN DIMER OF ANTI-FERRITIN ANTIBODY date
authors Nymalm, Y., Kravchuk, Z., Salminen, T., Chumanevich, A.A., Dubnovitsky, A.P., Kankare, J., Pentikainen, O., Lehtonen, J., Arosio, P., Martsev, S., Johnson, M.S.
compound source
symmetry
R_factor
R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.80
related structures by homologous chain: 1YYL
Gene
Ontology
ChainFunctionProcessComponent
L


Primary referenceAntiferritin VL homodimer binds human spleen ferritin with high specificity., Nymalm Y, Kravchuk Z, Salminen T, Chumanevich AA, Dubnovitsky AP, Kankare J, Pentikainen O, Lehtonen J, Arosio P, Martsev S, Johnson MS, J Struct Biol 2002 Jun;138(3):171-86. PMID:12217656
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (21 Kb) [Save to disk]
  • Biological Unit Coordinates (1f6l.pdb1.gz) 34 Kb
  • CSU: Contacts of Structural Units for 1F6L
  • Likely Quarternary Molecular Structure file(s) for 1F6L
  • Retrieve 1F6L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1F6L from S2C, [Save to disk]
    • View 1F6L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1F6L
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1F6L, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1f6ll_, region L [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1f6l] [1f6l_L]
  • SWISS-PROT database: [P01600]
  • Domain organization of [KV108_HUMAN] by SWISSPFAM
  • Domain found in 1F6L: [IGv ] by SMART
    • Other resources with information on 1F6L
  • Community annotation for 1F6L at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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