1F9E CASPASE-8 SPECIFICITY PROBED AT SUBSITE S4: CRYSTAL STRUCTURE OF THE CASPASE-8-Z-DEVD-CHO date
authors Blanchard, H., Donepudi, M., Tschopp, M., Kodandapani, L., Wu, J.C., Grutter, M.G.
compound source
symmetry
R_factor
R_Free 0.2890000
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.90
ligand ASA, PHQ enzyme
related structures by homologous chain: 1I4E, 1QDU
Gene
Ontology
ChainFunctionProcessComponent
A, K, E, C, I, G


F, J, B, H, D, L


Primary referenceCaspase-8 specificity probed at subsite S(4): crystal structure of the caspase-8-Z-DEVD-cho complex., Blanchard H, Donepudi M, Tschopp M, Kodandapani L, Wu JC, Grutter MG, J Mol Biol 2000 Sep 8;302(1):9-16. PMID:10964557
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (249 Kb) [Save to disk]
  • Biological Unit Coordinates (1f9e.pdb1.gz) 84 Kb
  • Biological Unit Coordinates (1f9e.pdb2.gz) 85 Kb
  • Biological Unit Coordinates (1f9e.pdb3.gz) 83 Kb
  • LPC: Ligand-Protein Contacts for 1F9E
  • CSU: Contacts of Structural Units for 1F9E
  • Likely Quarternary Molecular Structure file(s) for 1F9E
  • Structure Factors (493 Kb)
  • Retrieve 1F9E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1F9E from S2C, [Save to disk]
  • Re-refined 1f9e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1F9E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1F9E
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1F9E, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1f9e.1, region A:,B [Jmol] [rasmolscript] [script source]
        - Domain d1f9e.2, region C:,D [Jmol] [rasmolscript] [script source]
        - Domain d1f9e.3, region E:,F [Jmol] [rasmolscript] [script source]
        - Domain d1f9e.4, region G:,H [Jmol] [rasmolscript] [script source]
        - Domain d1f9e.5, region I:,J [Jmol] [rasmolscript] [script source]
        - Domain d1f9e.6, region K:,L [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1f9e_V] [1f9e_T] [1f9e_R] [1f9e_H] [1f9e_A] [1f9e_G] [1f9e_E] [1f9e_U] [1f9e_J] [1f9e_S] [1f9e_K] [1f9e_B] [1f9e_Q] [1f9e] [1f9e_I] [1f9e_L] [1f9e_D] [1f9e_F] [1f9e_C]
  • SWISS-PROT database: [Q14790]
  • Domain organization of [CASP8_HUMAN] by SWISSPFAM
  • Domain found in 1F9E: [CASc ] by SMART
  • Other resources with information on 1F9E
  • Community annotation for 1F9E at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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