1F9J Chaperone date Jul 10, 2000
title Structure Of A New Crystal Form Of Tetraubiquitin
authors C.L.Phillips, J.Thrower, C.M.Pickart, C.P.Hill
compound source
Molecule: Tetraubiquitin
Chain: A, B
Synonym: Ubiquitin
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 41 2 2
R_factor 0.225 R_Free 0.292
crystal
cell
length a length b length c angle alpha angle beta angle gamma
97.020 97.020 88.970 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
note 1F9J (Molecule of the Month:pdb60)
related structures by homologous chain: 1TBE, 1YD8
Primary referenceStructure of a new crystal form of tetraubiquitin., Phillips CL, Thrower J, Pickart CM, Hill CP, Acta Crystallogr D Biol Crystallogr 2001 Feb;57(Pt 2):341-4. PMID:11173499
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (28 Kb) [Save to disk]
  • Biological Unit Coordinates (1f9j.pdb1.gz) 48 Kb
  • CSU: Contacts of Structural Units for 1F9J
  • Likely Quarternary Molecular Structure file(s) for 1F9J
  • Structure Factors (46 Kb)
  • Retrieve 1F9J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1F9J from S2C, [Save to disk]
  • Re-refined 1f9j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1F9J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1F9J
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1F9J, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1f9ja_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1f9jb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1f9j from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1f9j_B] [1f9j_A] [1f9j]
  • SWISS-PROT database: [P62988]
  • Domain organization of [UBIQ_HUMAN] by SWISSPFAM
  • Domain found in 1F9J: [UBQ ] by SMART
  • Other resources with information on 1F9J
  • Community annotation for 1F9J at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1F9J from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science