1F9P Blood Clotting date Jul 11, 2000
title Crystal Structure Of Connective Tissue Activating Peptide-II III) Complexed With Polyvinylsulfonic Acid
authors J.Yang, T.Faulk, R.Aster, G.Visentin, B.Edwards, C.Castor
compound source
Molecule: Connective Tissue Activating Peptide-III
Chain: A
Synonym: Ctap-III
Other_details: Platelet Basic Protein N-Terminal Truncation
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell: Platelets
symmetry Space Group: P 43 21 2
R_factor 0.232 R_Free 0.272
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.700 54.700 58.290 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.93 Å
ligand ESA enzyme
related structures by homologous chain: 1NAP
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (20 Kb) [Save to disk]
  • Biological Unit Coordinates (1f9p.pdb1.gz) 16 Kb
  • LPC: Ligand-Protein Contacts for 1F9P
  • CSU: Contacts of Structural Units for 1F9P
  • Likely Quarternary Molecular Structure file(s) for 1F9P
  • Structure Factors (43 Kb)
  • Retrieve 1F9P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1F9P from S2C, [Save to disk]
  • Re-refined 1f9p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1F9P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1F9P
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1F9P, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1f9pa_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1f9p] [1f9p_A]
  • SWISS-PROT database: [P02775]
  • Domain organization of [CXCL7_HUMAN] by SWISSPFAM
  • Domain found in 1F9P: [SCY ] by SMART
    • Other resources with information on 1F9P
  • Community annotation for 1F9P at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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