1FAO Signaling Protein date Jul 13, 2000
title Structure Of The Pleckstrin Homology Domain From Dapp1phish Complex With Inositol 1,3,4,5-Tetrakisphosphate
authors K.M.Ferguson, J.M.Kavran, V.G.Sankaran, E.Fournier, S.J.Isakoff, E.Y.Skolnik, M.A.Lemmon
compound source
Molecule: Dual Adaptor Of Phosphotyrosine And 3-Phosphoinos
Chain: A
Fragment: Pleckstrin Homology Domain
Synonym: Dapp1, Phish, Bam32
Engineered: Yes
Other_details: Complex With Inositol 1,3,4,5-Tetrakisphosph
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11a
symmetry Space Group: P 21 21 21
R_factor 0.219 R_Free 0.232
crystal
cell
length a length b length c angle alpha angle beta angle gamma
40.674 46.273 64.743 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand 4IP enzyme
related structures by homologous chain: 1FB8
Primary referenceStructural basis for discrimination of 3-phosphoinositides by pleckstrin homology domains., Ferguson KM, Kavran JM, Sankaran VG, Fournier E, Isakoff SJ, Skolnik EY, Lemmon MA, Mol Cell 2000 Aug;6(2):373-84. PMID:10983984
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (24 Kb) [Save to disk]
  • Biological Unit Coordinates (1fao.pdb1.gz) 20 Kb
  • LPC: Ligand-Protein Contacts for 1FAO
  • CSU: Contacts of Structural Units for 1FAO
  • Likely Quarternary Molecular Structure file(s) for 1FAO
  • Retrieve 1FAO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FAO from S2C, [Save to disk]
  • View 1FAO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1FAO
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1FAO, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1faoa_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fao] [1fao_A]
  • SWISS-PROT database: [Q9UN19]
  • Domain organization of [DAPP1_HUMAN] by SWISSPFAM
  • Domain found in 1FAO: [PH ] by SMART
  • Other resources with information on 1FAO
  • Community annotation for 1FAO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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