1FBL Metalloprotease date Apr 24, 1995
title Structure Of Full-Length Porcine Synovial Collagenase (Mmp1) C-Terminal Domain Containing A Calcium-Linked, Four-Bladed Propeller
authors J.Li, P.Brick, D.M.Blow
compound source
Molecule: Fibroblast (Interstitial) Collagenase (Mmp-1)
Chain: A
Ec: 3.4.24.7
Engineered: Yes
Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 41
R_factor 0.217 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
161.140 161.140 52.220 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand CA, HTA, ZN BindingDB enzyme Hydrolase E.C.3.4.24.7 BRENDA
related structures by homologous chain: 1BIW, 1JAN, 1JH1
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of full-length porcine synovial collagenase reveals a C-terminal domain containing a calcium-linked, four-bladed beta-propeller., Li J, Brick P, O'Hare MC, Skarzynski T, Lloyd LF, Curry VA, Clark IM, Bigg HF, Hazleman BL, Cawston TE, et al., Structure 1995 Jun 15;3(6):541-9. PMID:8590015
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk]
  • Biological Unit Coordinates (1fbl.pdb1.gz) 132 Kb
  • LPC: Ligand-Protein Contacts for 1FBL
  • CSU: Contacts of Structural Units for 1FBL
  • Likely Quarternary Molecular Structure file(s) for 1FBL
  • Structure Factors (144 Kb)
  • Retrieve 1FBL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FBL from S2C, [Save to disk]
  • Re-refined 1fbl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1FBL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1FBL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1FBL, from MSDmotif at EBI
  • Genome occurence of 1FBL's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fbl_2, region 100-271 [Jmol] [rasmolscript] [script source]
        - Domain d1fbl_1, region 272-466 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fbl] [1fbl_A]
  • SWISS-PROT database: [P21692]
  • Domain organization of [MMP1_PIG] by SWISSPFAM
  • Domains found in 1FBL: [HX] [ZnMc ] by SMART
  • Other resources with information on 1FBL
  • Community annotation for 1FBL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science