1FC0 Transferase date Jul 17, 2000
title Human Liver Glycogen Phosphorylase Complexed With N-Acetyl-B Glucopyranosylamine
authors V.L.Rath, M.Ammirati, P.K.Lemotte, K.F.Fennell, M.M.Mansour, D.E. T.R.Hynes, G.K.Schulte, D.J.Wasilko, J.Pandit
compound source
Molecule: Glycogen Phosphorylase, Liver Form
Chain: A, B
Ec: 2.4.1.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Tissue: Liver
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector: Baculovirus
Expression_system_plasmid: Pbluebac III
symmetry Space Group: P 31
R_factor 0.198 R_Free 0.235
crystal
cell
length a length b length c angle alpha angle beta angle gamma
124.000 124.000 122.280 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.40 Å
ligand NBG, PLP enzyme Transferase E.C.2.4.1.1 BRENDA
related structures by homologous chain: 1NOK, 1Z6P
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceActivation of human liver glycogen phosphorylase by alteration of the secondary structure and packing of the catalytic core., Rath VL, Ammirati M, LeMotte PK, Fennell KF, Mansour MN, Danley DE, Hynes TR, Schulte GK, Wasilko DJ, Pandit J, Mol Cell 2000 Jul;6(1):139-48. PMID:10949035
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (267 Kb) [Save to disk]
  • Biological Unit Coordinates (1fc0.pdb1.gz) 261 Kb
  • LPC: Ligand-Protein Contacts for 1FC0
  • CSU: Contacts of Structural Units for 1FC0
  • Likely Quarternary Molecular Structure file(s) for 1FC0
  • Structure Factors (765 Kb)
  • Retrieve 1FC0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FC0 from S2C, [Save to disk]
  • Re-refined 1fc0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1FC0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1FC0
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1FC0, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fc0a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1fc0b_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fc0_B] [1fc0] [1fc0_A]
  • SWISS-PROT database: [P06737]
  • Domain organization of [PYGL_HUMAN] by SWISSPFAM
  • Other resources with information on 1FC0
  • Community annotation for 1FC0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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