1FC2 Immunoglobulin date May 21, 1981
title Crystallographic Refinement And Atomic Models Of A Human Fc And Its Complex With Fragment B Of Protein A From Staphyloc Aureus At 2.9-And 2.8-Angstroms Resolution
authors J.Deisenhofer
compound source
Molecule: Fragment B Of Protein A Complex
Chain: C
Engineered: Yes
 Organism_scientific: Staphylococcus Aureus Subsp. Aureus
Organism_taxid: 93061
Strain: Nctc 8325

Molecule: Immunoglobulin Fc
Chain: D
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 31 2 1
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
70.600 70.600 147.400 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.80 Å
ligand FUC, GAL, MAN, NAG, SO4 enzyme
related structures by homologous chain: 1DEE, 1I1A, 1IGT, 1SS1
Gene
Ontology
ChainFunctionProcessComponent
C


Primary referenceCrystallographic refinement and atomic models of a human Fc fragment and its complex with fragment B of protein A from Staphylococcus aureus at 2.9- and 2.8-A resolution., Deisenhofer J, Biochemistry 1981 Apr 28;20(9):2361-70. PMID:7236608
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk]
  • Biological Unit Coordinates (1fc2.pdb1.gz) 75 Kb
  • LPC: Ligand-Protein Contacts for 1FC2
  • CSU: Contacts of Structural Units for 1FC2
  • Likely Quarternary Molecular Structure file(s) for 1FC2
  • Retrieve 1FC2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FC2 from S2C, [Save to disk]
    • View 1FC2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1FC2
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1FC2, from MSDmotif at EBI
  • Genome occurence of 1FC2's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fc2c_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1l1fc2, region C:10-212 [Jmol] [rasmolscript] [script source]
        - Domain d1fc2d1, region D:238-341 [Jmol] [rasmolscript] [script source]
        - Domain d1fc2d2, region D:342-444 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fc2_D] [1fc2_C] [1fc2]
  • SWISS-PROT database: [P01857] [P38507]
  • Domain organization of [IGHG1_HUMAN] [SPA_STAAU] by SWISSPFAM
  • Domains found in 1FC2: [IG_like] [IGc1 ] by SMART
    • Other resources with information on 1FC2
  • Community annotation for 1FC2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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