1FCK Metal Transport date Jul 18, 2000
title Structure Of Diceric Human Lactoferrin
authors H.M.Baker, C.J.Baker, C.A.Smith, E.N.Baker
compound source
Molecule: Lactoferrin
Chain: A
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.203 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
154.900 97.100 56.000 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand CE, CO3 enzyme
related structures by homologous chain: 1H43, 1VFE
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMetal substitution in transferrins: specific binding of cerium(IV) revealed by the crystal structure of cerium-substituted human lactoferrin., Baker HM, Baker CJ, Smith CA, Baker EN, J Biol Inorg Chem 2000 Dec;5(6):692-8. PMID:11128996
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (115 Kb) [Save to disk]
  • Biological Unit Coordinates (1fck.pdb1.gz) 111 Kb
  • LPC: Ligand-Protein Contacts for 1FCK
  • CSU: Contacts of Structural Units for 1FCK
  • Likely Quarternary Molecular Structure file(s) for 1FCK
  • Retrieve 1FCK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FCK from S2C, [Save to disk]
    • View 1FCK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1FCK
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1FCK, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fcka1, region A:1-334 [Jmol] [rasmolscript] [script source]
        - Domain d1fcka2, region A:335-691 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fck] [1fck_A]
  • SWISS-PROT database: [P02788]
  • Domain organization of [TRFL_HUMAN] by SWISSPFAM
  • Domain found in 1FCK: [TR_FER ] by SMART
    • Other resources with information on 1FCK
  • Community annotation for 1FCK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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