1FDH Oxygen Transport date Aug 18, 1976
title Structure Of Human Foetal Deoxyhaemoglobin
authors J.A.Frierjunior
compound source
Molecule: Hemoglobin F (Deoxy) (Alpha Chain)
Chain: A, B
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Hemoglobin F (Deoxy) (Gamma Chain)
Chain: G, H
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
62.800 95.100 102.100 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand ACE, HEM enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • peroxidase activity


    • H, G
  • peroxidase activity


    • Primary referenceStructure of human foetal deoxyhaemoglobin., Frier JA, Perutz MF, J Mol Biol 1977 May 5;112(1):97-112. PMID:881729
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk]
  • Biological Unit Coordinates (1fdh.pdb1.gz) 78 Kb
  • LPC: Ligand-Protein Contacts for 1FDH
  • CSU: Contacts of Structural Units for 1FDH
  • Likely Quarternary Molecular Structure file(s) for 1FDH
  • Retrieve 1FDH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FDH from S2C, [Save to disk]
    • View 1FDH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1FDH
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1FDH, from MSDmotif at EBI
  • Genome occurence of 1FDH's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fdha_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1fdhg_, region G [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fdh_G] [1fdh_B] [1fdh_H] [1fdh] [1fdh_A]
  • SWISS-PROT database: [P69905] [P69892]
  • Belongs to the pore-forming globin (globin) family according to TCDB.
  • Domain organization of [HBA_HUMAN] [HBG2_HUMAN] by SWISSPFAM
    • Other resources with information on 1FDH
  • Community annotation for 1FDH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 1FDH from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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