1FDP Hydrolase date Dec 03, 1998
title Proenzyme Of Human Complement Factor D, Recombinant Profacto
authors H.Jing, K.J.Macon, D.Moore, L.J.Delucas, J.E.Volanakis, S.V.L.Nar
compound source
Molecule: Proenzyme Of Complement Factor D
Chain: A, B, C, D
Ec: 3.4.21.46
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell: Sf9
Expression_system_vector_type: Virus
Expression_system_vector: Baculovirus
Expression_system_plasmid: Acnpv
symmetry Space Group: P 1 21 1
R_factor 0.204 R_Free 0.251
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.050 70.320 86.300 90.00 101.98 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand
enzyme Hydrolase E.C.3.4.21.46 BRENDA
related structures by homologous chain: 1DST, 1HFD
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructural basis of profactor D activation: from a highly flexible zymogen to a novel self-inhibited serine protease, complement factor D., Jing H, Macon KJ, Moore D, DeLucas LJ, Volanakis JE, Narayana SV, EMBO J 1999 Feb 15;18(4):804-14. PMID:10022823
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (142 Kb) [Save to disk]
  • Biological Unit Coordinates (1fdp.pdb1.gz) 39 Kb
  • Biological Unit Coordinates (1fdp.pdb2.gz) 36 Kb
  • Biological Unit Coordinates (1fdp.pdb3.gz) 35 Kb
  • Biological Unit Coordinates (1fdp.pdb4.gz) 36 Kb
  • CSU: Contacts of Structural Units for 1FDP
  • Likely Quarternary Molecular Structure file(s) for 1FDP
  • Structure Factors (333 Kb)
  • Retrieve 1FDP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FDP from S2C, [Save to disk]
  • Re-refined 1fdp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1FDP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1FDP
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1FDP, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fdpa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1fdpb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1fdpc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1fdpd_, region D [Jmol] [rasmolscript] [script source]
  • Fold representative 1fdp from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fdp_C] [1fdp_A] [1fdp_D] [1fdp_B] [1fdp]
  • SWISS-PROT database: [P00746]
  • Domain organization of [CFAD_HUMAN] by SWISSPFAM
  • Domain found in 1FDP: [Tryp_SPc ] by SMART
  • Other resources with information on 1FDP
  • Community annotation for 1FDP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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