1FEX Structural Protein date Jul 24, 2000
title Solution Structure Of Myb-Domain Of Human Rap1
authors S.Hanaoka, Y.Nishimura, Riken Structural Genomicsproteomics I (Rsgi)
compound source
Molecule: Trf2-Interacting Telomeric Rap1 Protein
Chain: A
Fragment: Myb-Domain
Engineered: Yes
Mutation: Yes
Synthetic: Yes
Other_details: This Peptide Was Chemically Synthesized. The Of This Peptide Occurs Naturally In Humans (Homo Sapiens).
methodSolution NMR
note 1FEX is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNMR structure of the hRap1 Myb motif reveals a canonical three-helix bundle lacking the positive surface charge typical of Myb DNA-binding domains., Hanaoka S, Nagadoi A, Yoshimura S, Aimoto S, Li B, de Lange T, Nishimura Y, J Mol Biol 2001 Sep 7;312(1):167-75. PMID:11545594
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (393 Kb) [Save to disk]
  • Biological Unit Coordinates (1fex.pdb1.gz) 16 Kb
  • CSU: Contacts of Structural Units for 1FEX
  • Original NMR restraints for 1FEX from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1FEX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FEX from S2C, [Save to disk]
  • View 1FEX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1FEX
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1FEX, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fexa_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fex] [1fex_A]
  • SWISS-PROT database: [Q9NYB0]
  • Domain organization of [TE2IP_HUMAN] by SWISSPFAM
  • Other resources with information on 1FEX
  • Community annotation for 1FEX at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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