1FFK Ribosome date Jul 25, 2000
title Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution
authors N.Ban, P.Nissen, J.Hansen, P.B.Moore, T.A.Steitz
compound source
Molecule: 23s Rrna
Chain
Organism_scientific: Haloarcula Marismortui
Organism_taxid: 2238
Other_details: Cultured Cells

Molecule: 5s Rrna
Chain: 9

Organism_scientific: Haloarcula Marismortui
Organism_taxid: 2238
Other_details: Cultured Cells

Molecule: Ribosomal Protein L2
Chain: A
Synonym: 50s Ribosomal Protein L2p, Hmal2, Hl4

Organism_scientific: Haloarcula Marismortui
Organism_taxid: 2238
Other_details: Cultured Cells

Molecule: Ribosomal Protein L3
Chain: B
Synonym: 50s Ribosomal Protein L3p, Hmal3, Hl1
Mutation: Yes

Organism_scientific: Haloarcula Marismortui
Organism_taxid: 2238
Other_details: Cultured Cells

Molecule: Ribosomal Protein L4
Chain: C
Synonym: 50s Ribosomal Protein L4e, Hmal4, Hl6

Organism_scientific: Haloarcula Marismortui
Organism_taxid: 2238
Other_details: Cultured Cells

Molecule: Ribosomal Protein L5
Chain: D
Synonym: 50s Ribosomal Protein L5p, Hmal5, Hl13

Organism_scientific: Haloarcula Marismortui
Organism_taxid: 2238
Other_details: Cultured Cells

Molecule: Ribosomal Protein L7ae
Chain: E
Synonym: 30s Ribosomal Protein Hs6

Organism_scientific: Haloarcula Marismortui
Organism_taxid: 2238
Other_details: Cultured Cells

Molecule: Ribosomal Protein L10e
Chain: F

Organism_scientific: Haloarcula Marismortui
Organism_taxid: 2238
Other_details: Cultured Cells

Molecule: Ribosomal Protein L13
Chain: G
Synonym: 50s Ribosomal Protein L13p, Hmal13

Organism_scientific: Haloarcula Marismortui
Organism_taxid: 2238
Other_details: Cultured Cells

Molecule: Ribosomal Protein L14
Chain: H
Synonym: 50s Ribosomal Protein L14p, Hmal14, Hl27

Organism_scientific: Haloarcula Marismortui
Organism_taxid: 2238
Other_details: Cultured Cells

Molecule: Ribosomal Protein L15e
Chain: I

Organism_scientific: Haloarcula Marismortui
Organism_taxid: 2238
Other_details: Cultured Cells

Molecule: Ribosomal Protein L15
Chain: J
Synonym: 50s Ribosomal Protein L15p, Hmal15, Hl9

Organism_scientific: Haloarcula Marismortui
Organism_taxid: 2238
Other_details: Cultured Cells

Molecule: Ribosomal Protein L18
Chain: K
Synonym: 50s Ribosomal Protein L18p, Hmal18, Hl12

Organism_scientific: Haloarcula Marismortui
Organism_taxid: 2238
Other_details: Cultured Cells

Molecule: Ribosomal Protein L18e
Chain: L
Synonym: 50s Ribosomal Protein L18e, Hl29, L19

Organism_scientific: Haloarcula Marismortui
Organism_taxid: 2238
Other_details: Cultured Cells

Molecule: Ribosomal Protein L19
Chain: M
Synonym: 50s Ribosomal Protein L19e, Hmal19, Hl24

Organism_scientific: Haloarcula Marismortui
Organism_taxid: 2238
Other_details: Cultured Cells

Molecule: Ribosomal Protein L21e
Chain: N
Synonym: 50s Ribosomal Protein L21e, Hl31

Organism_scientific: Haloarcula Marismortui
Organism_taxid: 2238
Other_details: Cultured Cells

Molecule: Ribosomal Protein L22
Chain: O
Synonym: 50s Ribosomal Protein L22p, Hmal22, Hl23

Organism_scientific: Haloarcula Marismortui
Organism_taxid: 2238
Other_details: Cultured Cells

Molecule: Ribosomal Protein L23
Chain: P
Synonym: 50s Ribosomal Protein L23p, Hmal23, Hl25, L21

Organism_scientific: Haloarcula Marismortui
Organism_taxid: 2238
Other_details: Cultured Cells

Molecule: Ribosomal Protein L24
Chain: Q
Synonym: 50s Ribosomal Protein L24p, Hmal24, Hl16, Hl15

Organism_scientific: Haloarcula Marismortui
Organism_taxid: 2238
Other_details: Cultured Cells

Molecule: Ribosomal Protein L24e
Chain: R
Synonym: 50s Ribosomal Protein L24e, Hl21hl22

Organism_scientific: Haloarcula Marismortui
Organism_taxid: 2238
Other_details: Cultured Cells

Molecule: Ribosomal Protein L29
Chain: S
Synonym: 50s Ribosomal Protein L29p, Hmal29, Hl33

Organism_scientific: Haloarcula Marismortui
Organism_taxid: 2238
Other_details: Cultured Cells

Molecule: Ribosomal Protein L30
Chain: T
Synonym: 50s Ribosomal Protein L30p, Hmal30, Hl20, Hl16

Organism_scientific: Haloarcula Marismortui
Organism_taxid: 2238
Other_details: Cultured Cells

Molecule: Ribosomal Protein L31e
Chain: U
Synonym: 50s Ribosomal Protein L31e, L34, Hl30

Organism_scientific: Haloarcula Marismortui
Organism_taxid: 2238
Other_details: Cultured Cells

Molecule: Ribosomal Protein L32e
Chain: V
Synonym: 50s Ribosomal Protein L32e, Hl5

Organism_scientific: Haloarcula Marismortui
Organism_taxid: 2238
Other_details: Cultured Cells

Molecule: Ribosomal Protein L37ae
Chain: W

Organism_scientific: Haloarcula Marismortui
Organism_taxid: 2238
Other_details: Cultured Cells

Molecule: Ribosomal Protein L37e
Chain: X
Synonym: 50s Ribosomal Protein L37e, L35e

Organism_scientific: Haloarcula Marismortui
Organism_taxid: 2238
Other_details: Cultured Cells

Molecule: Ribosomal Protein L39e
Chain: Y
Synonym: 50s Ribosomal Proteins L39e, Hl39e, Hl46e

Organism_scientific: Haloarcula Marismortui
Organism_taxid: 2238
Other_details: Cultured Cells

Molecule: Ribosomal Protein L44e
Chain: Z
Synonym: 50s Ribosomal Protein L44e, La, Hla

Organism_scientific: Haloarcula Marismortui
Organism_taxid: 2238
Other_details: Cultured Cells

Molecule: Ribosomal Protein L6
Chain: 1
Synonym: 50s Ribosomal Protein L6p, Hmal6, Hl10

Organism_scientific: Haloarcula Marismortui
Organism_taxid: 2238
Other_details: Cultured Cells
symmetry Space Group: C 2 2 21
R_factor 0.252 R_Free 0.261
crystal
cell
length a length b length c angle alpha angle beta angle gamma
211.660 299.670 573.770 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand CD, K, MG enzyme
note 1FFK (Molecule of the Month:pdb10)
related structures by homologous chain: 1Q86
Gene
Ontology
ChainFunctionProcessComponent
1


A


B


C


D


E


F


G


H


I


J


K


L


M


N


O


P


Q


R


S


T


U


V


W


X


Y


Z


Primary referenceThe complete atomic structure of the large ribosomal subunit at 2.4 A resolution., Ban N, Nissen P, Hansen J, Moore PB, Steitz TA, Science 2000 Aug 11;289(5481):905-20. PMID:10937989
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1266 Kb) [Save to disk]
  • Biological Unit Coordinates (1ffk.pdb1.gz) 1256 Kb
  • LPC: Ligand-Protein Contacts for 1FFK
  • CSU: Contacts of Structural Units for 1FFK
  • Likely Quarternary Molecular Structure file(s) for 1FFK
  • Structure Factors (8984 Kb)
  • Retrieve 1FFK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FFK from S2C, [Save to disk]
  • Re-refined 1ffk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1FFK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1FFK
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1FFK, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ffk11, region 1:1-79 [Jmol] [rasmolscript] [script source]
        - Domain d1ffk12, region 1:80-172 [Jmol] [rasmolscript] [script source]
        - Domain d1ffka2, region A:1-90 [Jmol] [rasmolscript] [script source]
        - Domain d1ffka1, region A:91-237 [Jmol] [rasmolscript] [script source]
        - Domain d1ffkb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1ffkc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1ffkd_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1ffke_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1ffkf_, region F [Jmol] [rasmolscript] [script source]
        - Domain d1ffkg_, region G [Jmol] [rasmolscript] [script source]
        - Domain d1ffkh_, region H [Jmol] [rasmolscript] [script source]
        - Domain d1ffki_, region I [Jmol] [rasmolscript] [script source]
        - Domain d1ffkj_, region J [Jmol] [rasmolscript] [script source]
        - Domain d1ffkk_, region K [Jmol] [rasmolscript] [script source]
        - Domain d1ffkl_, region L [Jmol] [rasmolscript] [script source]
        - Domain d1ffkm_, region M [Jmol] [rasmolscript] [script source]
        - Domain d1ffkn_, region N [Jmol] [rasmolscript] [script source]
        - Domain d1ffko_, region O [Jmol] [rasmolscript] [script source]
        - Domain d1ffkp_, region P [Jmol] [rasmolscript] [script source]
        - Domain d1ffkq_, region Q [Jmol] [rasmolscript] [script source]
        - Domain d1ffkr_, region R [Jmol] [rasmolscript] [script source]
        - Domain d1ffks_, region S [Jmol] [rasmolscript] [script source]
        - Domain d1ffkt_, region T [Jmol] [rasmolscript] [script source]
        - Domain d1ffku_, region U [Jmol] [rasmolscript] [script source]
        - Domain d1ffkv_, region V [Jmol] [rasmolscript] [script source]
        - Domain d1ffkw_, region W [Jmol] [rasmolscript] [script source]
        - Domain d1ffkx_, region X [Jmol] [rasmolscript] [script source]
        - Domain d1ffky_, region Y [Jmol] [rasmolscript] [script source]
        - Domain d1ffkz_, region Z [Jmol] [rasmolscript] [script source]
  • Fold representative 1ffk from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ffk_G] [1ffk_W] [1ffk_R] [1ffk_T] [1ffk_0] [1ffk_B] [1ffk_P] [1ffk_9] [1ffk_J] [1ffk_E] [1ffk_Z] [1ffk_M] [1ffk_V] [1ffk] [1ffk_C] [1ffk_1] [1ffk_F] [1ffk_A] [1ffk_Q] [1ffk_D] [1ffk_L] [1ffk_S] [1ffk_Y] [1ffk_H] [1ffk_U] [1ffk_N] [1ffk_K] [1ffk_X] [1ffk_I] [1ffk_O]
  • SWISS-PROT database: [P60617] [P29198] [P22450] [P60618] [P12737] [P12733] [P14123] [P14119] [P12734] [P10970] [P12732] [P14116] [P10972] [P10971] [P20276] [P14121] [P18138] [P12736] [P60619] [P32410] [P22452] [P20279] [P32411] [P12735] [P14124] [P14135] [P12743]
  • Domain organization of [RL10_HALMA] [RL13_HALMA] [RL14_HALMA] [RL15E_HALMA] [RL15_HALMA] [RL18E_HALMA] [RL18_HALMA] [RL19_HALMA] [RL21_HALMA] [RL22_HALMA] [RL23_HALMA] [RL24E_HALMA] [RL24_HALMA] [RL29_HALMA] [RL2_HALMA] [RL30_HALMA] [RL31_HALMA] [RL32_HALMA] [RL37A_HALMA] [RL37_HALMA] [RL39_HALMA] [RL3_HALMA] [RL44_HALMA] [RL4_HALMA] [RL5_HALMA] [RL6_HALMA] [RL7A_HALMA] by SWISSPFAM
  • Domains found in 1FFK: [KOW] [Ribosomal_L14] [Ribosomal_L15e] [Ribosomal_L19e] [Ribosomal_L2] [Ribosomal_L2_C] [Ribosomal_L31e] [Ribosomal_L32e] [TRASH ] by SMART
  • Other resources with information on 1FFK
  • Community annotation for 1FFK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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