1FFM Blood Clotting date Feb 19, 1999
title The First Egf-Like Domain From Human Blood Coagulation Fvii (Fucosylated At Ser-60), Nmr, Minimized Average Structure
authors Y.H.Kao, G.F.Lee, Y.Wang, M.A.Starovasnik, R.F.Kelley, M.W.Spellman, L.Lerner
compound source
Molecule: Protein (Blood Coagulation Factor Vii)
Chain: A
Fragment: First Egf-Like Domain (Residues 45-87 Fucosylated At Ser-60);
Engineered: Yes
Other_details: Calcium Bound Form
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
ligand FUC enzyme
related structures by homologous chain: 1DVA, 1FF7

Primary referenceThe effect of O-fucosylation on the first EGF-like domain from human blood coagulation factor VII., Kao YH, Lee GF, Wang Y, Starovasnik MA, Kelley RF, Spellman MW, Lerner L, Biochemistry 1999 Jun 1;38(22):7097-110. PMID:10353820
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (15 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 1FFM
  • CSU: Contacts of Structural Units for 1FFM
  • Original NMR restraints for 1FFM from PDB
  • Retrieve 1FFM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FFM from S2C, [Save to disk]
  • View 1FFM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1FFM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1FFM, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ffma_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1ffm from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ffm] [1ffm_A]
  • SWISS-PROT database: [P08709]
  • Domain organization of [FA7_HUMAN] by SWISSPFAM
  • Domain found in 1FFM: [EGF_CA ] by SMART
  • Other resources with information on 1FFM
  • Community annotation for 1FFM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science