1FGG Transferase date Jul 28, 2000
title Crystal Structure Of 1,3-Glucuronyltransferase I (Glcat-I) C With Gal-Gal-Xyl, Udp, And Mn2+
authors L.C.Pedersen, K.Tsuchida, H.Kitagawa, K.Sugahara, T.A.Darden
compound source
Molecule: Glucuronyltransferase I
Chain: A, B
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Liver
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pet28a
symmetry Space Group: P 1 21 1
R_factor 0.188 R_Free 0.215
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.842 48.219 102.204 90.00 92.79 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand GAL, MN, UDP, UNX enzyme
related structures by homologous chain: 1KWS
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceHeparan/chondroitin sulfate biosynthesis. Structure and mechanism of human glucuronyltransferase I., Pedersen LC, Tsuchida K, Kitagawa H, Sugahara K, Darden TA, Negishi M, J Biol Chem 2000 Nov 3;275(44):34580-5. PMID:10946001
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk]
  • Biological Unit Coordinates (1fgg.pdb1.gz) 82 Kb
  • LPC: Ligand-Protein Contacts for 1FGG
  • CSU: Contacts of Structural Units for 1FGG
  • Likely Quarternary Molecular Structure file(s) for 1FGG
  • Retrieve 1FGG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FGG from S2C, [Save to disk]
  • View 1FGG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1FGG
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1FGG, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fgga_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1fggb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1fgg from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fgg_B] [1fgg] [1fgg_A]
  • SWISS-PROT database: [O94766]
  • Domain organization of [B3GA3_HUMAN] by SWISSPFAM
  • Other resources with information on 1FGG
  • Community annotation for 1FGG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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