1FIB Blood Coagulation Factor date Apr 02, 1996
title Recombinant Human Gamma-Fibrinogen Carboxyl Terminal Fragment (Residues 143-411) Bound To Calcium At Ph 6.0
authors V.C.Yee, D.C.Teller
compound source
Molecule: Gamma-Fibrinogen Carboxyl Terminal Fragment
Chain: A
Fragment: Carboxyl Terminus, Residues 143 - 411
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Blood
Gene: Human Fibrinogen Gamma Chain C
Expression_system: Pichia Pastoris
Expression_system_taxid: 4922
Expression_system_plasmid: Ppic9k
Expression_system_gene: Human Fibrinogen Gamma Chain Cdna Encoding Val 143 - Val 411
symmetry Space Group: P 1 21 1
R_factor 0.159 R_Free 0.227
crystal
cell
length a length b length c angle alpha angle beta angle gamma
37.530 68.420 47.670 90.00 105.36 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand CA enzyme
related structures by homologous chain: 1FID, 3FIB
Primary referenceCrystal structure of a 30 kDa C-terminal fragment from the gamma chain of human fibrinogen., Yee VC, Pratt KP, Cote HC, Trong IL, Chung DW, Davie EW, Stenkamp RE, Teller DC, Structure 1997 Jan 15;5(1):125-38. PMID:9016719
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk]
  • Biological Unit Coordinates (1fib.pdb1.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 1FIB
  • CSU: Contacts of Structural Units for 1FIB
  • Likely Quarternary Molecular Structure file(s) for 1FIB
  • Structure Factors (109 Kb)
  • Retrieve 1FIB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FIB from S2C, [Save to disk]
  • Re-refined 1fib structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1FIB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1FIB
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1FIB, from MSDmotif at EBI
  • Genome occurence of 1FIB's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fib__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 1fib from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fib_A] [1fib]
  • SWISS-PROT database: [P02679]
  • Domain organization of [FIBG_HUMAN] by SWISSPFAM
  • Domain found in 1FIB: [FBG ] by SMART
  • Other resources with information on 1FIB
  • Community annotation for 1FIB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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