1FIE Transferase date Aug 24, 1996
title Recombinant Human Coagulation Factor Xiii
authors V.C.Yee, D.C.Teller
compound source
Molecule: Coagulation Factor Xiii
Chain: A, B
Fragment: A-Subunit (Thrombin-Cleaved)
Ec: 2.3.2.13
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Placenta
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Baker'S Yeast
Expression_system_taxid: 4932
symmetry Space Group: P 1 21 1
R_factor 0.182 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
101.100 73.130 134.700 90.00 106.40 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand
enzyme Transferase E.C.2.3.2.13 BRENDA
related structures by homologous chain: 1GGU, 1QRK
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural evidence that the activation peptide is not released upon thrombin cleavage of factor XIII., Yee VC, Pedersen LC, Bishop PD, Stenkamp RE, Teller DC, Thromb Res 1995 Jun 1;78(5):389-97. PMID:7660355
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (246 Kb) [Save to disk]
  • Biological Unit Coordinates (1fie.pdb1.gz) 241 Kb
  • CSU: Contacts of Structural Units for 1FIE
  • Likely Quarternary Molecular Structure file(s) for 1FIE
  • Retrieve 1FIE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FIE from S2C, [Save to disk]
  • View 1FIE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1FIE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1FIE, from MSDmotif at EBI
  • Genome occurence of 1FIE's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fiea4, region A:191-515 [Jmol] [rasmolscript] [script source]
        - Domain d1fiea2, region A:516-627 [Jmol] [rasmolscript] [script source]
        - Domain d1fiea3, region A:628-727 [Jmol] [rasmolscript] [script source]
        - Domain d1fiea1, region A:9-190 [Jmol] [rasmolscript] [script source]
        - Domain d1fieb1, region B:10-190 [Jmol] [rasmolscript] [script source]
        - Domain d1fieb4, region B:191-515 [Jmol] [rasmolscript] [script source]
        - Domain d1fieb2, region B:516-627 [Jmol] [rasmolscript] [script source]
        - Domain d1fieb3, region B:628-727 [Jmol] [rasmolscript] [script source]
  • Fold representative 1fie from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fie_B] [1fie] [1fie_A]
  • SWISS-PROT database: [P00488]
  • Domain organization of [F13A_HUMAN] by SWISSPFAM
  • Domain found in 1FIE: [TGc ] by SMART
  • Alignments of the sequence of 1FIE with the sequences similar proteins can be viewed for 1FIE's classification [F13A_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [F13A_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1FIE
  • Community annotation for 1FIE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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