1FJL Transcription Dna date Dec 17, 1995
title Homeodomain From The Drosophila Paired Protein Bound To A Dn Oligonucleotide
authors D.S.Wilson, B.Guenther, C.Desplan, J.Kuriyan
compound source
Molecule: Paired Protein
Chain: A, B, C
Fragment: Homeodomain
Synonym: Prd, Paired Protein
Engineered: Yes
Mutation: Yes
Organism_scientific: Drosophila Melanogaster
Organism_common: Fruit Fly
Organism_taxid: 7227
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'-D(Apaptpapaptpcptpgpaptptpap
Chain: D
Engineered: Yes

Synthetic: Yes

Molecule: Dna (5'-D(Tpgptpapaptpcpapgpaptptpap
Chain: E
Engineered: Yes

Synthetic: Yes

Molecule: Dna (5'-D(Tpgptpapaptpcptpgpaptptpap
Chain: F
Engineered: Yes

Synthetic: Yes
symmetry Space Group: C 2 2 21
R_factor 0.198 R_Free NULL
length a length b length c angle alpha angle beta angle gamma
72.210 146.890 77.230 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
related structures by homologous chain: 1YZ8
A, C, B

Primary referenceHigh resolution crystal structure of a paired (Pax) class cooperative homeodomain dimer on DNA., Wilson DS, Guenther B, Desplan C, Kuriyan J, Cell 1995 Sep 8;82(5):709-19. PMID:7671301
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk]
  • Biological Unit Coordinates (1fjl.pdb1.gz) 37 Kb
  • Biological Unit Coordinates (1fjl.pdb2.gz) 36 Kb
  • CSU: Contacts of Structural Units for 1FJL
  • Likely Quarternary Molecular Structure file(s) for 1FJL
  • Structure Factors (193 Kb)
  • Retrieve 1FJL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FJL from S2C, [Save to disk]
  • View 1FJL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1FJL
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1FJL, from MSDmotif at EBI
  • Genome occurence of 1FJL's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fjla_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1fjlb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1fjlc_, region C [Jmol] [rasmolscript] [script source]
  • Fold representative 1fjl from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fjl_F] [1fjl_C] [1fjl] [1fjl_A] [1fjl_B] [1fjl_D] [1fjl_E]
  • SWISS-PROT database: [P06601]
  • Domain organization of [PRD_DROME] by SWISSPFAM
  • Domain found in 1FJL: [HOX ] by SMART
  • Other resources with information on 1FJL
  • Community annotation for 1FJL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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