1FKD Cis-Trans Isomerase date Dec 02, 1992
title Fk-506 Binding Protein: Three-Dimensional Structure Of The C With The Antagonist L-685,818
authors J.W.Becker, J.Rotonda, B.M.Mckeever
compound source
Molecule: Fk506 Binding Protein
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 42 21 2
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.140 58.140 55.650 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.72 Å
ligand 818 enzyme
related structures by homologous chain: 1J4I, 2FKE
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceFK-506-binding protein: three-dimensional structure of the complex with the antagonist L-685,818., Becker JW, Rotonda J, McKeever BM, Chan HK, Marcy AI, Wiederrecht G, Hermes JD, Springer JP, J Biol Chem 1993 May 25;268(15):11335-9. PMID:7684380
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (24 Kb) [Save to disk]
  • Biological Unit Coordinates (1fkd.pdb1.gz) 38 Kb
  • Biological Unit Coordinates (1fkd.pdb2.gz) 75 Kb
  • LPC: Ligand-Protein Contacts for 1FKD
  • CSU: Contacts of Structural Units for 1FKD
  • Likely Quarternary Molecular Structure file(s) for 1FKD
  • Structure Factors (124 Kb)
  • Retrieve 1FKD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FKD from S2C, [Save to disk]
  • Re-refined 1fkd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1FKD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1FKD
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1FKD, from MSDmotif at EBI
  • Genome occurence of 1FKD's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fkd__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fkd] [1fkd_A]
  • SWISS-PROT database: [P62942]
  • Belongs to the immunophilin-like prolyl:peptidyl isomerase regulator (i-ppi) family according to TCDB.
  • Domain organization of [FKB1A_HUMAN] by SWISSPFAM
  • Other resources with information on 1FKD
  • Community annotation for 1FKD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science