1FM1 Hydrolase date Aug 15, 2000
title Solution Structure Of The Catalytic Fragment Of Human Collagenase-3 (Mmp-13) Complexed With A Hydroxamic Acid Inhibitor
authors F.J.Moy, P.K.Chanda, J.M.Chen, S.Cosmi, W.Edris, J.I.Levin, R.Powers
compound source
Molecule: Collagenase-3
Chain: A
Fragment: Catalytic Fragment
Synonym: Mmp-13
Ec: 3.4.24.-
Engineered: Yes
Other_details: Hydroxamic Acid Inhibitor Complex
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pprommp-13
methodSolution NMR
ligand CA, WAY, ZN BindingDB enzyme Hydrolase E.C.3.4.24 BRENDA
related structures by homologous chain: 1CK7, 1FLS
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceHigh-resolution solution structure of the catalytic fragment of human collagenase-3 (MMP-13) complexed with a hydroxamic acid inhibitor., Moy FJ, Chanda PK, Chen JM, Cosmi S, Edris W, Levin JI, Powers R, J Mol Biol 2000 Sep 22;302(3):671-89. PMID:10986126
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1246 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 1FM1
  • CSU: Contacts of Structural Units for 1FM1
  • Original NMR restraints for 1FM1 from PDB
  • Retrieve 1FM1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FM1 from S2C, [Save to disk]
  • View 1FM1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1FM1
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1FM1, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fm1a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1fm1 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fm1_A] [1fm1]
  • SWISS-PROT database: [P45452]
  • Domain organization of [MMP13_HUMAN] by SWISSPFAM
  • Domain found in 1FM1: [ZnMc ] by SMART
  • Other resources with information on 1FM1
  • Community annotation for 1FM1 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science