1FM4 Allergen date Aug 16, 2000
title Crystal Structure Of The Birch Pollen Allergen Bet V 1l
authors Z.Markovic-Housley, M.Degano, D.Lamba, E.Von Roepenack-Lahaye, S M.Susani, F.Ferreira, O.Scheiner, H.Breiteneder
compound source
Molecule: Major Pollen Allergen Bet V 1-L
Chain: A
Engineered: Yes
Organism_scientific: Betula Pendula
Organism_common: European White Birch
Organism_taxid: 3505
Tissue: Pollen
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmw 175-Bet V 1l
symmetry Space Group: P 1 21 1
R_factor 0.197 R_Free 0.240
length a length b length c angle alpha angle beta angle gamma
33.130 57.230 38.650 90.00 91.94 90.00
method X-Ray Diffractionresolution 1.97 Å
ligand DXC enzyme
related structures by homologous chain: 1BV1
  • protein phosphatase inhibito...

  • Primary referenceCrystal structure of a hypoallergenic isoform of the major birch pollen allergen Bet v 1 and its likely biological function as a plant steroid carrier., Markovic-Housley Z, Degano M, Lamba D, von Roepenack-Lahaye E, Clemens S, Susani M, Ferreira F, Scheiner O, Breiteneder H, J Mol Biol 2003 Jan 3;325(1):123-33. PMID:12473456
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (33 Kb) [Save to disk]
  • Biological Unit Coordinates (1fm4.pdb1.gz) 28 Kb
  • LPC: Ligand-Protein Contacts for 1FM4
  • CSU: Contacts of Structural Units for 1FM4
  • Likely Quarternary Molecular Structure file(s) for 1FM4
  • Structure Factors (77 Kb)
  • Retrieve 1FM4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FM4 from S2C, [Save to disk]
  • Re-refined 1fm4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1FM4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1FM4
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1FM4, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fm4a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fm4_A] [1fm4]
  • SWISS-PROT database: [P43185]
  • Domain organization of [BEV1L_BETVE] by SWISSPFAM
  • Other resources with information on 1FM4
  • Community annotation for 1FM4 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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