1FP0 Transcription date Aug 29, 2000
title Solution Structure Of The Phd Domain From The Kap-1 Corepres
authors A.D.Capili, D.C.Schultz, F.J.Rauscher Iii, K.L.B.Borden
compound source
Molecule: Kap-1 Corepressor
Chain: A
Fragment: Phd Domain
Synonym: Transcription Intermediary Factor 1-Beta, Nuclear Corepressor, Kap-1, Krab-Associated Protein 1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pqe50
methodSolution NMR
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of the PHD domain from the KAP-1 corepressor: structural determinants for PHD, RING and LIM zinc-binding domains., Capili AD, Schultz DC, RauscherIII FJ, Borden KL, EMBO J 2001 Jan 15;20(1-2):165-77. PMID:11226167
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (26 Kb) [Save to disk]
  • Biological Unit Coordinates (1fp0.pdb1.gz) 22 Kb
  • LPC: Ligand-Protein Contacts for 1FP0
  • CSU: Contacts of Structural Units for 1FP0
  • Retrieve 1FP0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FP0 from S2C, [Save to disk]
  • View 1FP0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1FP0
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1FP0, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fp0a1, region A:19-88 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fp0_A] [1fp0]
  • SWISS-PROT database: [Q13263]
  • Domain organization of [TIF1B_HUMAN] by SWISSPFAM
  • Domain found in 1FP0: [PHD ] by SMART
  • Other resources with information on 1FP0
  • Community annotation for 1FP0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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