1FPV Virus date Mar 04, 1993
title Structure Determination Of Feline Panleukopenia Virus Empty Particles
authors M.Agbandje, M.G.Rossmann
compound source
Molecule: Feline Panleukopenia Virus (Strain B) Viral Protein 2;
Chain: A
Engineered: Yes
Organism_scientific: Feline Panleukopenia Virus
Organism_taxid: 10786
Strain: Strain B
symmetry Space Group: P 21 21 21
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
380.100 379.300 350.900 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.30 Å
note 1FPV (Molecule of the Month:pdb125)
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure determination of feline panleukopenia virus empty particles., Agbandje M, McKenna R, Rossmann MG, Strassheim ML, Parrish CR, Proteins 1993 Jun;16(2):155-71. PMID:8392729
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (84 Kb) [Save to disk]
  • Biological Unit Coordinates (1fpv.pdb1.gz) 4440 Kb
  • CSU: Contacts of Structural Units for 1FPV
  • Likely Quarternary Molecular Structure file(s) for 1FPV
  • Retrieve 1FPV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FPV from S2C, [Save to disk]
  • View 1FPV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1FPV
  • VIPERdb: visual, structural and computational analysis of 1FPV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1FPV, from MSDmotif at EBI
  • Genome occurence of 1FPV's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fpv__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 1fpv from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fpv_A] [1fpv]
  • SWISS-PROT database: [P24840]
  • Domain organization of [COAT_FPV19] by SWISSPFAM
  • Other resources with information on 1FPV
  • Community annotation for 1FPV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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