1FSI Hydrolase date Sep 10, 2000
title Crystal Structure Of Cyclic Nucleotide Phosphodiesterase Of Appr>P From Arabidopsis Thaliana
authors A.Hofmann, A.Zdanov, P.Genschik, W.Filipowicz, S.Ruvinov, A.Wlodawer
compound source
Molecule: Cyclic Phosphodiesterase
Chain: A, B, C
Engineered: Yes
 Organism_scientific: Arabidopsis Thaliana
Organism_common: Thale Cress
Organism_taxid: 3702
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11d
symmetry Space Group: P 61 2 2
R_factor 0.196 R_Free 0.265
crystal
cell
length a length b length c angle alpha angle beta angle gamma
125.916 125.916 209.897 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.50 Å
ligand SO4 enzyme
related structures by homologous chain: 1JH7
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceStructure and mechanism of activity of the cyclic phosphodiesterase of Appr>p, a product of the tRNA splicing reaction., Hofmann A, Zdanov A, Genschik P, Ruvinov S, Filipowicz W, Wlodawer A, EMBO J 2000 Nov 15;19(22):6207-17. PMID:11080166
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (97 Kb) [Save to disk]
  • Biological Unit Coordinates (1fsi.pdb1.gz) 33 Kb
  • Biological Unit Coordinates (1fsi.pdb2.gz) 31 Kb
  • Biological Unit Coordinates (1fsi.pdb3.gz) 32 Kb
  • Biological Unit Coordinates (1fsi.pdb4.gz) 179 Kb
  • Biological Unit Coordinates (1fsi.pdb5.gz) 61 Kb
  • Biological Unit Coordinates (1fsi.pdb6.gz) 62 Kb
  • LPC: Ligand-Protein Contacts for 1FSI
  • CSU: Contacts of Structural Units for 1FSI
  • Likely Quarternary Molecular Structure file(s) for 1FSI
  • Structure Factors (198 Kb)
  • Retrieve 1FSI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FSI from S2C, [Save to disk]
  • Re-refined 1fsi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1FSI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1FSI
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1FSI, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fsia_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1fsib_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1fsic_, region C [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fsi] [1fsi_A] [1fsi_B] [1fsi_C]
  • SWISS-PROT database: [O04147]
  • Domain organization of [CPD_ARATH] by SWISSPFAM
    • Other resources with information on 1FSI
  • Community annotation for 1FSI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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