1FST Signaling Protein Inhibitor date Sep 11, 2000
title Crystal Structure Of Truncated Human Rhogdi Triple Mutant
authors K.L.Longenecker, S.M.Garrard, P.J.Sheffield, Z.S.Derewenda
compound source
Molecule: Rho Gdp-Dissociation Inhibitor 1
Chain: A, B
Fragment: C-Terminal Domain
Synonym: Guanine Nucleotide Dissociation Inhibitor, Rhogdi
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex
symmetry Space Group: H 3
R_factor 0.213 R_Free 0.261
crystal
cell
length a length b length c angle alpha angle beta angle gamma
125.210 125.210 82.660 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.70 Å
related structures by homologous chain: 1DOA, 1HH4
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceProtein crystallization by rational mutagenesis of surface residues: Lys to Ala mutations promote crystallization of RhoGDI., Longenecker KL, Garrard SM, Sheffield PJ, Derewenda ZS, Acta Crystallogr D Biol Crystallogr 2001 May;57(Pt 5):679-88. PMID:11320308
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (1fst.pdb1.gz) 24 Kb
  • Biological Unit Coordinates (1fst.pdb2.gz) 25 Kb
  • CSU: Contacts of Structural Units for 1FST
  • Likely Quarternary Molecular Structure file(s) for 1FST
  • Structure Factors (111 Kb)
  • Retrieve 1FST in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FST from S2C, [Save to disk]
  • Re-refined 1fst structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1FST in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1FST
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1FST, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fsta_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1fstb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fst] [1fst_B] [1fst_A]
  • SWISS-PROT database: [P52565]
  • Domain organization of [GDIR1_HUMAN] by SWISSPFAM
  • Other resources with information on 1FST
  • Community annotation for 1FST at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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