1FUJ Hydrolase (Serine Protease) date Jan 25, 1996
title Pr3 (Myeloblastin)
authors M.Fujinaga, M.M.Chernaia, R.Halenbeck, K.Koths, M.N.G.James
compound source
Molecule: Pr3
Chain: A, B, C, D
Synonym: Myeloblastin
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Unidentified Baculovirus
Expression_system_taxid: 10469
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Baculovirus
symmetry Space Group: P 1 21 1
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
85.603 54.070 113.506 90.00 90.69 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand FUC, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceThe crystal structure of PR3, a neutrophil serine proteinase antigen of Wegener's granulomatosis antibodies., Fujinaga M, Chernaia MM, Halenbeck R, Koths K, James MN, J Mol Biol 1996 Aug 16;261(2):267-78. PMID:8757293
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (150 Kb) [Save to disk]
  • Biological Unit Coordinates (1fuj.pdb1.gz) 145 Kb
  • LPC: Ligand-Protein Contacts for 1FUJ
  • CSU: Contacts of Structural Units for 1FUJ
  • Likely Quarternary Molecular Structure file(s) for 1FUJ
  • Structure Factors (600 Kb)
  • Retrieve 1FUJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FUJ from S2C, [Save to disk]
  • Re-refined 1fuj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1FUJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1FUJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1FUJ, from MSDmotif at EBI
  • Genome occurence of 1FUJ's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fuja_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1fujb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1fujc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1fujd_, region D [Jmol] [rasmolscript] [script source]
  • Fold representative 1fuj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fuj_B] [1fuj_D] [1fuj_C] [1fuj_A] [1fuj]
  • SWISS-PROT database: [P24158]
  • Domain organization of [PRTN3_HUMAN] by SWISSPFAM
  • Domain found in 1FUJ: [Tryp_SPc ] by SMART
  • Alignments of the sequence of 1FUJ with the sequences similar proteins can be viewed for 1FUJ's classification [PRTN3_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [PRTN3_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1FUJ
  • Community annotation for 1FUJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science