1FVO Transferase date Sep 20, 2000
title Crystal Structure Of Human Ornithine Transcarbamylase Comple Carbamoyl Phosphate
authors D.Shi, H.Morizono, X.Yu, N.M.Allewell, M.Tuchman
compound source
Molecule: Ornithine Transcarbamylase
Chain: A, B
Synonym: Otcase
Ec: 2.1.3.3
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pet 21a+
symmetry Space Group: I 2 3
R_factor 0.202 R_Free 0.236
crystal
cell
length a length b length c angle alpha angle beta angle gamma
203.426 203.426 203.426 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand CP enzyme Transferase E.C.2.1.3.3 BRENDA
related structures by homologous chain: 1EP9
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceHuman ornithine transcarbamylase: crystallographic insights into substrate recognition and conformational changes., Shi D, Morizono H, Yu X, Tong L, Allewell NM, Tuchman M, Biochem J 2001 Mar 15;354(Pt 3):501-9. PMID:11237854
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (109 Kb) [Save to disk]
  • Biological Unit Coordinates (1fvo.pdb1.gz) 156 Kb
  • Biological Unit Coordinates (1fvo.pdb2.gz) 155 Kb
  • LPC: Ligand-Protein Contacts for 1FVO
  • CSU: Contacts of Structural Units for 1FVO
  • Likely Quarternary Molecular Structure file(s) for 1FVO
  • Structure Factors (383 Kb)
  • Retrieve 1FVO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FVO from S2C, [Save to disk]
  • Re-refined 1fvo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1FVO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1FVO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1FVO, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fvoa2, region A:185-354 [Jmol] [rasmolscript] [script source]
        - Domain d1fvoa1, region A:34-184 [Jmol] [rasmolscript] [script source]
        - Domain d1fvob2, region B:185-354 [Jmol] [rasmolscript] [script source]
        - Domain d1fvob1, region B:34-184 [Jmol] [rasmolscript] [script source]
  • Fold representative 1fvo from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fvo_A] [1fvo_B] [1fvo]
  • SWISS-PROT database: [P00480]
  • Domain organization of [OTC_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 1FVO with the sequences similar proteins can be viewed for 1FVO's classification [OTC_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [OTC_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1FVO
  • Community annotation for 1FVO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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