1FVV Transferase, Cell Cycle date Sep 20, 2000
title The Structure Of Cdk2cyclin A In Complex With An Oxindole I
authors S.T.Davis, B.G.Benson, H.N.Bramson, D.E.Chapman, S.H.Dickerson, K D.J.Eberwein, M.Edelstein, S.V.Frye, R.T.Gampe Jr., R.J.Griffin P.A.Harris, A.M.Hassell, W.D.Holmes, R.N.Hunter, V.B.Knick, K.La B.Lovejoy, M.J.Luzzio, D.Murray, P.Parker, W.J.Rocque, L.Shewchu J.M.Veal, D.H.Walker, L.K.Kuyper
compound source
Molecule: Cyclin-Dependent Kinase 2
Chain: A, C
Synonym: Cdk2, P33 Protein Kinase
Ec: 2.7.1.37
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pfastbac1 Or Pachlt-A

Molecule: Cyclin A
Chain: B, D
Synonym: Cyclin A2
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 62 2 2
R_factor 0.260 R_Free 0.260
crystal
cell
length a length b length c angle alpha angle beta angle gamma
184.952 184.952 212.832 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.80 Å
ligand 107 enzyme Transferase E.C.2.7.1.37 BRENDA
related structures by homologous chain: 1H28, 1OL1
Gene
Ontology
ChainFunctionProcessComponent
A, C


Primary referencePrevention of chemotherapy-induced alopecia in rats by CDK inhibitors., Davis ST, Benson BG, Bramson HN, Chapman DE, Dickerson SH, Dold KM, Eberwein DJ, Edelstein M, Frye SV, Gampe Jr RT, Griffin RJ, Harris PA, Hassell AM, Holmes WD, Hunter RN, Knick VB, Lackey K, Lovejoy B, Luzzio MJ, Murray D, Parker P, Rocque WJ, Shewchuk L, Veal JM, Walker DH, Kuyper LF, Science 2001 Jan 5;291(5501):134-7. PMID:11141566
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (190 Kb) [Save to disk]
  • Biological Unit Coordinates (1fvv.pdb1.gz) 94 Kb
  • Biological Unit Coordinates (1fvv.pdb2.gz) 94 Kb
  • LPC: Ligand-Protein Contacts for 1FVV
  • CSU: Contacts of Structural Units for 1FVV
  • Likely Quarternary Molecular Structure file(s) for 1FVV
  • Structure Factors (720 Kb)
  • Retrieve 1FVV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FVV from S2C, [Save to disk]
  • Re-refined 1fvv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1FVV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1FVV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1FVV, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fvva_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1fvvb1, region B:173-309 [Jmol] [rasmolscript] [script source]
        - Domain d1fvvb2, region B:310-432 [Jmol] [rasmolscript] [script source]
        - Domain d1fvvc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1fvvd1, region D:173-309 [Jmol] [rasmolscript] [script source]
        - Domain d1fvvd2, region D:310-432 [Jmol] [rasmolscript] [script source]
  • Fold representative 1fvv from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fvv] [1fvv_A] [1fvv_D] [1fvv_B] [1fvv_C]
  • SWISS-PROT database: [P20248] [P24941]
  • Domain organization of [CCNA2_HUMAN] [CDK2_HUMAN] by SWISSPFAM
  • Domains found in 1FVV: [CYCLIN] [Cyclin_C] [S_TKc ] by SMART
  • Other resources with information on 1FVV
  • Community annotation for 1FVV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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