1FXL Transcription Rna date Sep 26, 2000
title Crystal Structure Of Hud And Au-Rich Element Of The C-Fos Rna
authors X.Wang, T.M.T.Hall
compound source
Molecule: 5'-R(Pupupupupapupupupu)-3'
Chain: B
Fragment: Fragment Of The C-Fos Au-Rich Element
Engineered: Yes
Synthetic: Yes

Molecule: Paraneoplastic Encephalomyelitis Antigen Hud
Chain: A
Fragment: N-Terminal Two Rrm-Domains
Synonym: Hud, Hu-Antigen D
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Brain
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pproexhtc
symmetry Space Group: P 1 21 1
R_factor 0.192 R_Free 0.239
crystal
cell
length a length b length c angle alpha angle beta angle gamma
30.310 99.380 33.340 90.00 106.40 90.00
method X-Ray Diffractionresolution 1.80 Å
related structures by homologous chain: 1G2E
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for recognition of AU-rich element RNA by the HuD protein., Wang X, Tanaka Hall TM, Nat Struct Biol 2001 Feb;8(2):141-5. PMID:11175903
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (38 Kb) [Save to disk]
  • Biological Unit Coordinates (1fxl.pdb1.gz) 35 Kb
  • CSU: Contacts of Structural Units for 1FXL
  • Likely Quarternary Molecular Structure file(s) for 1FXL
  • Structure Factors (130 Kb)
  • Retrieve 1FXL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FXL from S2C, [Save to disk]
  • Re-refined 1fxl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1FXL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1FXL
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1FXL, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fxla2, region A:119-203 [Jmol] [rasmolscript] [script source]
        - Domain d1fxla1, region A:37-118 [Jmol] [rasmolscript] [script source]
  • Fold representative 1fxl from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fxl_B] [1fxl] [1fxl_A]
  • SWISS-PROT database: [P26378]
  • Domain organization of [ELAV4_HUMAN] by SWISSPFAM
  • Domain found in 1FXL: [RRM ] by SMART
  • Other resources with information on 1FXL
  • Community annotation for 1FXL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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