1FYC Transferase date Feb 21, 1997
title Inner Lipoyl Domain From Human Pyruvate Dehydrogenase (Pdh) Nmr, 1 Structure
authors M.J.Howard, C.Fuller, R.W.Broadhurst, J.Quinn, S.J.Yeaman, R.N.Pe
compound source
Molecule: Dihydrolipoamide Acetyltransferase (E2p)
Chain: A
Fragment: Lipoyl Domain
Engineered: Yes
Other_details: Dihydrolipoamide Acetyltransferase Subunit O Pyruvate Dehydrogenase (Pdh) Multienzyme Complex (Unlipoyla Domain)
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Liver
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Hlip
Other_details: Expressed As A Gst Fusion Protein
methodSolution NMR
enzyme Transferase E.C. BRENDA
related structures by homologous chain: 1Y8P
Primary referenceThree-dimensional structure of the major autoantigen in primary biliary cirrhosis., Howard MJ, Fuller C, Broadhurst RW, Perham RN, Tang JG, Quinn J, Diamond AG, Yeaman SJ, Gastroenterology 1998 Jul;115(1):139-46. PMID:9649469
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (30 Kb) [Save to disk]
  • Biological Unit Coordinates (1fyc.pdb1.gz) 28 Kb
  • CSU: Contacts of Structural Units for 1FYC
  • Original NMR restraints for 1FYC from PDB
  • Retrieve 1FYC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FYC from S2C, [Save to disk]
  • View 1FYC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1FYC
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1FYC, from MSDmotif at EBI
  • Genome occurence of 1FYC's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fyc__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 1fyc from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fyc_A] [1fyc]
  • SWISS-PROT database: [P10515]
  • Domain organization of [ODP2_HUMAN] by SWISSPFAM
  • Other resources with information on 1FYC
  • Community annotation for 1FYC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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