1FYN Transferase date May 17, 1995
title Phosphotransferase
authors A.Musacchio, M.Saraste, M.Wilmanns
compound source
Molecule: Phosphotransferase Fyn
Chain: A
Fragment: Sh3 Domain
Synonym: Proto-Oncogene Tyrosine Kinase
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Strain: Bl21 De3
Gene: Fyn Tyrosine Kinase
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 3bp-2
Chain: B
Engineered: Yes
Other_details: Synthetic Peptide (Ppaypppppvp)

symmetry Space Group: I 2 2 2
R_factor 0.234 R_Free NULL
length a length b length c angle alpha angle beta angle gamma
42.000 43.300 65.400 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
enzyme Transferase E.C. BRENDA
related structures by homologous chain: 1QCF, 2PTK
Primary referenceHigh-resolution crystal structures of tyrosine kinase SH3 domains complexed with proline-rich peptides., Musacchio A, Saraste M, Wilmanns M, Nat Struct Biol 1994 Aug;1(8):546-51. PMID:7664083
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (16 Kb) [Save to disk]
  • Biological Unit Coordinates (1fyn.pdb1.gz) 12 Kb
  • CSU: Contacts of Structural Units for 1FYN
  • Likely Quarternary Molecular Structure file(s) for 1FYN
  • Retrieve 1FYN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FYN from S2C, [Save to disk]
  • View 1FYN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1FYN
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1FYN, from MSDmotif at EBI
  • Genome occurence of 1FYN's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fyna_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fyn_A] [1fyn] [1fyn_B]
  • SWISS-PROT database: [P06241]
  • Domain organization of [FYN_HUMAN] by SWISSPFAM
  • Domain found in 1FYN: [SH3 ] by SMART
  • Other resources with information on 1FYN
  • Community annotation for 1FYN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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