1FZO Immune System date Oct 03, 2000
title Mhc Class I Natural Mutant H-2kbm8 Heavy Chain Complexed Wit Microglobulin And Sendai Virus Nucleoprotein
authors M.G.Rudolph, J.A.Speir, A.Brunmark, N.Mattsson, M.R.Jackson, P.A. L.Teyton, I.A.Wilson
compound source
Molecule: H-2 Class I Histocompatibility Antigen, K-B Alpha
Chain: A
Fragment: Extracellular Domain
Engineered: Yes
Mutation: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Drosophila Melanogaster
Expression_system_common: Fruit Fly
Expression_system_taxid: 7227

Molecule: Protein (Beta-2-Microglobulin)
Chain: B
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Drosophila Melanogaster
Expression_system_common: Fruit Fly
Expression_system_taxid: 7227

Molecule: Protein (Nucleocapsid Protein)
Chain: P
Fragment: Residues 324-332
Synonym: Sev9
Engineered: Yes

Synthetic: Yes
Other_details: The Peptide Was Chemically Synthesized. The Of The Peptide Is Found Naturally In Sendai Virus.
symmetry Space Group: P 21 21 2
R_factor 0.197 R_Free 0.211
crystal
cell
length a length b length c angle alpha angle beta angle gamma
136.310 87.350 45.170 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand CSO, FUL, MPD, MRD, NAG, PO4 enzyme
related structures by homologous chain: 1FZM, 1TVH
Gene
Ontology
ChainFunctionProcessComponent
B


Primary referenceThe crystal structures of K(bm1) and K(bm8) reveal that subtle changes in the peptide environment impact thermostability and alloreactivity., Rudolph MG, Speir JA, Brunmark A, Mattsson N, Jackson MR, Peterson PA, Teyton L, Wilson IA, Immunity 2001 Mar;14(3):231-42. PMID:11290333
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (78 Kb) [Save to disk]
  • Biological Unit Coordinates (1fzo.pdb1.gz) 72 Kb
  • LPC: Ligand-Protein Contacts for 1FZO
  • CSU: Contacts of Structural Units for 1FZO
  • Likely Quarternary Molecular Structure file(s) for 1FZO
  • Structure Factors (815 Kb)
  • Retrieve 1FZO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FZO from S2C, [Save to disk]
  • Re-refined 1fzo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1FZO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1FZO
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1FZO, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fzoa2, region A:1-181 [Jmol] [rasmolscript] [script source]
        - Domain d1fzoa1, region A:182-274 [Jmol] [rasmolscript] [script source]
        - Domain d1fzob_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fzo] [1fzo_B] [1fzo_P] [1fzo_A]
  • SWISS-PROT database: [P01887] [P01901] [P04857]
  • Domain organization of [B2MG_MOUSE] [HA1B_MOUSE] [NCAP_SENDE] by SWISSPFAM
  • Domain found in 1FZO: [IGc1 ] by SMART
  • Other resources with information on 1FZO
  • Community annotation for 1FZO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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