1G3X INTERCALATION OF AN 9ACRIDINE-PEPTIDE DRUG IN A DNA DODECAMER date
authors Malinina, L., Soler-Lopez, M., Aymami, J., Subirana, J.A.
compound source
symmetry
R_factor
R_Free 0.2660700
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.70
ligand 9AC, MG enzyme
Primary referenceIntercalation of an acridine-peptide drug in an AA/TT base step in the crystal structure of [d(CGCGAATTCGCG)](2) with six duplexes and seven Mg(2+) ions in the asymmetric unit., Malinina L, Soler-Lopez M, Aymami J, Subirana JA, Biochemistry 2002 Jul 30;41(30):9341-8. PMID:12135355
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk]
  • Biological Unit Coordinates (1g3x.pdb1.gz) 11 Kb
  • Biological Unit Coordinates (1g3x.pdb2.gz) 11 Kb
  • Biological Unit Coordinates (1g3x.pdb3.gz) 11 Kb
  • Biological Unit Coordinates (1g3x.pdb4.gz) 11 Kb
  • Biological Unit Coordinates (1g3x.pdb5.gz) 11 Kb
  • Biological Unit Coordinates (1g3x.pdb6.gz) 12 Kb
  • LPC: Ligand-Protein Contacts for 1G3X
  • CSU: Contacts of Structural Units for 1G3X
  • Likely Quarternary Molecular Structure file(s) for 1G3X
  • Retrieve 1G3X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1G3X from S2C, [Save to disk]
    • View 1G3X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1G3X
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1G3X, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1g3x_J] [1g3x_D] [1g3x_B] [1g3x] [1g3x_H] [1g3x_C] [1g3x_K] [1g3x_M] [1g3x_F] [1g3x_G] [1g3x_A] [1g3x_E] [1g3x_I] [1g3x_L]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1G3X
  • Community annotation for 1G3X at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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