1G4D Viral Protein Dna date Oct 26, 2000
title Nmr Structure Of The Mu Bacteriophage Repressor Dna-Binding Complex
authors J.M.Wojciak, J.Iwahara, R.T.Clubb
compound source
Molecule: 5'-D(Pcpcptptptptpcpapgptpapaptpcp
Chain: B
Engineered: Yes
Synthetic: Yes

Molecule: 5'-D(Pcpapgpaptptpapcptpgpapapapap
Chain: C
Engineered: Yes

Synthetic: Yes

Molecule: Repressor Protein C
Chain: A
Fragment: N-Terminal Dna-Binding Domain (Residues 13-81)
Synonym: Mu Bacteriophage C Repressor Protein
Engineered: Yes

Organism_scientific: Enterobacteria Phage Mu
Organism_taxid: 10677
Gene: Mu C
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
methodSolution NMR
related structures by homologous chain: 1QPM
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe Mu repressor-DNA complex contains an immobilized 'wing' within the minor groove., Wojciak JM, Iwahara J, Clubb RT, Nat Struct Biol 2001 Jan;8(1):84-90. PMID:11135677
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (876 Kb) [Save to disk]
  • Biological Unit Coordinates (1g4d.pdb1.gz) 34 Kb
  • CSU: Contacts of Structural Units for 1G4D
  • Retrieve 1G4D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1G4D from S2C, [Save to disk]
  • View 1G4D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1G4D
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1G4D, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1g4da_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1g4d] [1g4d_A] [1g4d_B] [1g4d_C]
  • SWISS-PROT database: [P06019]
  • Domain organization of [RPC1_BPMU] by SWISSPFAM
  • Other resources with information on 1G4D
  • Community annotation for 1G4D at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1G4D from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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