1G5J Apoptosis date Nov 01, 2000
title Complex Of Bcl-Xl With Peptide From Bad
authors A.M.Petros, D.G.Nettesheim, Y.Wang, E.T.Olejniczak, R.P.Meadows, J.Mack, K.Swift, E.D.Matayoshi, H.Zhang, C.B.Thompson, S.W.Fesik
compound source
Molecule: Apoptosis Regulator Bcl-X
Chain: A
Fragment: Residues 1-209
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bclx
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Bad Protein
Chain: B
Fragment: Residues 140-164
Engineered: Yes
Mutation: Yes

Synthetic: Yes
Other_details: The Bad Peptide Was Chemically Synthesized.
methodSolution NMR
related structures by homologous chain: 1G5M, 1YSG


Primary referenceRationale for Bcl-xL/Bad peptide complex formation from structure, mutagenesis, and biophysical studies., Petros AM, Nettesheim DG, Wang Y, Olejniczak ET, Meadows RP, Mack J, Swift K, Matayoshi ED, Zhang H, Thompson CB, Fesik SW, Protein Sci 2000 Dec;9(12):2528-34. PMID:11206074
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1G5J
  • Retrieve 1G5J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1G5J from S2C, [Save to disk]
  • View 1G5J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1G5J
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1G5J, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1g5ja_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1g5j from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1g5j_B] [1g5j] [1g5j_A]
  • SWISS-PROT database: [Q07817] [Q92934]
  • Belongs to the bcl-2 (bcl-2) family according to TCDB.
  • Domain organization of [B2CL1_HUMAN] [BAD_HUMAN] by SWISSPFAM
  • Domains found in 1G5J: [BCL] [BH4 ] by SMART
  • Other resources with information on 1G5J
  • Community annotation for 1G5J at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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