1GAT Transcription Dna date Jun 28, 1993
title Solution Structure Of The Specific Dna Complex Of The Zinc C Dna Binding Domain Of The Erythroid Transcription Factor Ga Multidimensional Nmr
authors G.M.Clore, J.G.Omichinski, A.M.Gronenborn
compound source
Molecule: Dna (5'-D(Papgpaptpapapapc)3')
Chain: B
Engineered: Yes
 Synthetic: Yes
Other_details: Chemically Synthesized

Molecule: Dna (5'-D(Pgptptptpaptpcpt)-3')
Chain: C
Engineered: Yes
Synthetic: Yes

Molecule: Erythroid Transcription Factor Gata-1
Chain: A
Engineered: Yes
Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
ligand ZN enzyme
related structures by homologous chain: 1GAU, 2GAT
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNMR structure of a specific DNA complex of Zn-containing DNA binding domain of GATA-1., Omichinski JG, Clore GM, Schaad O, Felsenfeld G, Trainor C, Appella E, Stahl SJ, Gronenborn AM, Science. 1993 Jul 23;261(5120):438-46. PMID:8332909
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (32 Kb) [Save to disk]
  • Biological Unit Coordinates (1gat.pdb1.gz) 28 Kb
  • LPC: Ligand-Protein Contacts for 1GAT
  • CSU: Contacts of Structural Units for 1GAT
  • Retrieve 1GAT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1GAT from S2C, [Save to disk]
    • View 1GAT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1GAT
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1GAT, from MSDmotif at EBI
  • Genome occurence of 1GAT's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1gata_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1gat from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1gat_B] [1gat] [1gat_A] [1gat_C]
  • SWISS-PROT database: [P17678]
  • Domain organization of [GATA1_CHICK] by SWISSPFAM
  • Domain found in 1GAT: [ZnF_GATA ] by SMART
    • Other resources with information on 1GAT
  • Community annotation for 1GAT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 1GAT from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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