1GCF Binding Protein date Apr 10, 1997
title Nmr Structure Of The C-Terminal Domain Of The Ligand-Binding Murine Granulocyte Colony-Stimulating Factor Receptor, 12 S
authors K.Yamasaki, S.Naito, H.Anaguchi, T.Ohkubo, Y.Ota
compound source
Molecule: Granulocyte Colony-Stimulating Factor Receptor
Chain: A
Fragment: C-Terminal Domain Of The Ligand-Binding Region
Engineered: Yes
Mutation: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pmal-P
Other_details: Expressed As A Fusion Protein With Maltose B Protein
methodSolution NMR
related structures by homologous chain: 1CD9, 1CTO
Primary referenceSolution structure of an extracellular domain containing the WSxWS motif of the granulocyte colony-stimulating factor receptor and its interaction with ligand., Yamasaki K, Naito S, Anaguchi H, Ohkubo T, Ota Y, Nat Struct Biol 1997 Jun;4(6):498-504. PMID:9187659
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (351 Kb) [Save to disk]
  • Biological Unit Coordinates (1gcf.pdb1.gz) 30 Kb
  • CSU: Contacts of Structural Units for 1GCF
  • Retrieve 1GCF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1GCF from S2C, [Save to disk]
  • View 1GCF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1GCF
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1GCF, from MSDmotif at EBI
  • Genome occurence of 1GCF's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1gcf__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 1gcf from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1gcf_A] [1gcf]
  • SWISS-PROT database: [P40223]
  • Domain organization of [CSF3R_MOUSE] by SWISSPFAM
  • Other resources with information on 1GCF
  • Community annotation for 1GCF at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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