1GCZ Immune System date Aug 24, 2000
title Macrophage Migration Inhibitory Factor (Mif) Complexed With Inhibitor.
authors N.Katayama, H.Kurihara
compound source
Molecule: Macrophage Migration Inhibitory Factor
Chain: A, B, C
Synonym: Mif
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet22b
symmetry Space Group: P 21 21 21
R_factor 0.199 R_Free 0.240
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.600 67.400 87.300 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand CIT, SO4, YZ9 BindingDB enzyme
related structures by homologous chain: 1GIF, 1MFF
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceCoumarin and chromen-4-one analogues as tautomerase inhibitors of macrophage migration inhibitory factor: discovery and X-ray crystallography., Orita M, Yamamoto S, Katayama N, Aoki M, Takayama K, Yamagiwa Y, Seki N, Suzuki H, Kurihara H, Sakashita H, Takeuchi M, Fujita S, Yamada T, Tanaka A, J Med Chem 2001 Feb 15;44(4):540-7. PMID:11170644
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk]
  • Biological Unit Coordinates (1gcz.pdb1.gz) 61 Kb
  • LPC: Ligand-Protein Contacts for 1GCZ
  • CSU: Contacts of Structural Units for 1GCZ
  • Likely Quarternary Molecular Structure file(s) for 1GCZ
  • Structure Factors (234 Kb)
  • Retrieve 1GCZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1GCZ from S2C, [Save to disk]
  • Re-refined 1gcz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1GCZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1GCZ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1GCZ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1gcza_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1gczb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1gczc_, region C [Jmol] [rasmolscript] [script source]
  • Fold representative 1gcz from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1gcz_B] [1gcz] [1gcz_A] [1gcz_C]
  • SWISS-PROT database: [P14174]
  • Domain organization of [MIF_HUMAN] by SWISSPFAM
  • Other resources with information on 1GCZ
  • Community annotation for 1GCZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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