1GD8	Ribosome	date	Sep 22, 2000
title	The Crystal Structure Of Bacteria-Specific L17 Ribosomal Pro
authors	D.G.Vassylyev, M.Shirouzu, T.Wada, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound		source
Molecule: 50s Ribosomal Protein L17 Chain: A, B, C, D, E, F, G, H, I Engineered: Yes		Organism_scientific: Thermus Thermophilus Organism_taxid: 274 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet11
symmetry	Space Group: P 41	R_factor 0.210 R_Free 0.254
crystal cell	length a length b length c angle alpha angle beta angle gamma 109.239 109.239 128.841 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.30 Å
Gene Ontology	Chain Function Process Component F, A, E, B, H, C, D, I, G

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (158 Kb) [Save to disk] Biological Unit Coordinates (1gd8.pdb1.gz) 19 Kb Biological Unit Coordinates (1gd8.pdb2.gz) 19 Kb Biological Unit Coordinates (1gd8.pdb3.gz) 19 Kb Biological Unit Coordinates (1gd8.pdb4.gz) 19 Kb Biological Unit Coordinates (1gd8.pdb5.gz) 19 Kb Biological Unit Coordinates (1gd8.pdb6.gz) 19 Kb Biological Unit Coordinates (1gd8.pdb7.gz) 19 Kb Biological Unit Coordinates (1gd8.pdb8.gz) 19 Kb Biological Unit Coordinates (1gd8.pdb9.gz) 19 Kb CSU: Contacts of Structural Units for 1GD8 Likely Quarternary Molecular Structure file(s) for 1GD8 Structure Factors (433 Kb) Retrieve 1GD8 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1GD8 from S2C, [Save to disk] Re-refined 1gd8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1GD8 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1GD8

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1GD8, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1gd8a_, region A [Jmol] [rasmolscript] [script source]     - Domain d1gd8b_, region B [Jmol] [rasmolscript] [script source]     - Domain d1gd8c_, region C [Jmol] [rasmolscript] [script source]     - Domain d1gd8d_, region D [Jmol] [rasmolscript] [script source]     - Domain d1gd8e_, region E [Jmol] [rasmolscript] [script source]     - Domain d1gd8f_, region F [Jmol] [rasmolscript] [script source]     - Domain d1gd8g_, region G [Jmol] [rasmolscript] [script source]     - Domain d1gd8h_, region H [Jmol] [rasmolscript] [script source]     - Domain d1gd8i_, region I [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1gd8_B] [1gd8_I] [1gd8] [1gd8_D] [1gd8_G] [1gd8_H] [1gd8_A] [1gd8_E] [1gd8_F] [1gd8_C] SWISS-PROT database: [Q9Z9H5] Domain organization of [RL17_THET8] by SWISSPFAM

Other resources with information on 1GD8

Community annotation for 1GD8 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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