1GDT Dna Binding Protein Dna date Apr 11, 1995
title Crystal Structure Of A Site-Specific Recombinase, Gamma-Delt Resolvase Complexed With A 34 Bp Cleavage Site
authors W.Yang, T.A.Steitz
compound source
Molecule: Site I Of Res Dna
Chain: C
Synonym: Crossover Site Or Cleavage Site
Engineered: Yes
Synthetic: Yes

Molecule: Site I Of Res Dna
Chain: D, F
Synonym: Crossover Site Or Cleavage Site
Engineered: Yes

Synthetic: Yes

Molecule: Site I Of Res Dna
Chain: E
Synonym: Crossover Site Or Cleavage Site
Engineered: Yes

Synthetic: Yes

Molecule: Protein (Gamma Delta Resolvase)
Chain: A, B
Synonym: Gd Resolvase
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Strains That Contain F Episome
Gene: Tnpr
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Ar120
Expression_system_plasmid: Mgh285
Expression_system_gene: Tnpr
symmetry Space Group: P 21 21 21
R_factor 0.235 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
113.000 157.000 37.200 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.00 Å
related structures by homologous chain: 1GHT, 1RET, 2RSL
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of the site-specific recombinase gamma delta resolvase complexed with a 34 bp cleavage site., Yang W, Steitz TA, Cell 1995 Jul 28;82(2):193-207. PMID:7628011
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (89 Kb) [Save to disk]
  • Biological Unit Coordinates (1gdt.pdb1.gz) 85 Kb
  • CSU: Contacts of Structural Units for 1GDT
  • Likely Quarternary Molecular Structure file(s) for 1GDT
  • Retrieve 1GDT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1GDT from S2C, [Save to disk]
  • View 1GDT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1GDT
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1GDT, from MSDmotif at EBI
  • Genome occurence of 1GDT's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1gdta2, region A:1-140 [Jmol] [rasmolscript] [script source]
        - Domain d1gdta1, region A:141-183 [Jmol] [rasmolscript] [script source]
        - Domain d1gdtb2, region B:1-140 [Jmol] [rasmolscript] [script source]
        - Domain d1gdtb1, region B:141-183 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1gdt] [1gdt_C] [1gdt_D] [1gdt_B] [1gdt_E] [1gdt_F] [1gdt_A]
  • SWISS-PROT database: [P03012]
  • Domain organization of [TNR1_ECOLI] by SWISSPFAM
  • Domain found in 1GDT: [Resolvase ] by SMART
  • Other resources with information on 1GDT
  • Community annotation for 1GDT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1GDT from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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