1GFL Fluorescent Protein date Aug 23, 1996
title Structure Of Green Fluorescent Protein
authors F.Yang, L.G.Moss, G.N.Phillips Jr.
compound source
Molecule: Green Fluorescent Protein
Chain: A, B
Engineered: Yes
Mutation: Yes
 Organism_scientific: Aequorea Victoria
Organism_taxid: 6100
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Ptu58
symmetry Space Group: P 41 21 2
R_factor 0.214 R_Free 0.262
crystal
cell
length a length b length c angle alpha angle beta angle gamma
89.226 89.226 119.771 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
note 1GFL (Molecule of the Month:pdb42)
related structures by homologous chain: 1RMM, 1YHI
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe molecular structure of green fluorescent protein., Yang F, Moss LG, Phillips GN Jr, Nat Biotechnol 1996 Oct;14(10):1246-51. PMID:9631087
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk]
  • Biological Unit Coordinates (1gfl.pdb1.gz) 78 Kb
  • CSU: Contacts of Structural Units for 1GFL
  • Likely Quarternary Molecular Structure file(s) for 1GFL
  • Structure Factors (387 Kb)
  • Retrieve 1GFL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1GFL from S2C, [Save to disk]
  • Re-refined 1gfl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1GFL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1GFL
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1GFL, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1gfla_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1gflb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1gfl_B] [1gfl] [1gfl_A]
  • SWISS-PROT database: [P42212]
  • Domain organization of [GFP_AEQVI] by SWISSPFAM
    • Other resources with information on 1GFL
  • Community annotation for 1GFL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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