1GFW Hydrolase date Jun 16, 2000
title The 2.8 Angstrom Crystal Structure Of Caspase-3 (Apopain Or Complex With An Isatin Sulfonamide Inhibitor.
authors N.O.Concha, C.A.Janson
compound source
Molecule: Caspase-3 (Apopain, P20)
Chain: A
Fragment: Activated Mature Caspase-3 (P20) Without Pro-Doma Linker (Residues 29-175);
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Other_details: Human T-Lymphocyte Cell Line Jurkat

Molecule: Caspase-3 (Apopain, P10)
Chain: B
Fragment: Activated Mature Caspase-3 (P10) Without Pro-Doma Linker (Residues 181-277);
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
symmetry Space Group: I 2 2 2
R_factor 0.200 R_Free 0.285
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.200 83.300 96.000 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand MSI BindingDB enzyme
note 1GFW supersedes 1QA8
related structures by homologous chain: 1I3O, 1RHR
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referencePotent and selective nonpeptide inhibitors of caspases 3 and 7 inhibit apoptosis and maintain cell functionality., Lee D, Long SA, Adams JL, Chan G, Vaidya KS, Francis TA, Kikly K, Winkler JD, Sung CM, Debouck C, Richardson S, Levy MA, DeWolf WE Jr, Keller PM, Tomaszek T, Head MS, Ryan MD, Haltiwanger RC, Liang PH, Janson CA, McDevitt PJ, Johanson K, Concha NO, Chan W, Abdel-Meguid SS, Badger AM, Lark MW, Nadeau DP, Suva LJ, Gowen M, Nuttall ME, J Biol Chem 2000 May 26;275(21):16007-14. PMID:10821855
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (1gfw.pdb1.gz) 41 Kb
  • Biological Unit Coordinates (1gfw.pdb2.gz) 160 Kb
  • Biological Unit Coordinates (1gfw.pdb3.gz) 161 Kb
  • Biological Unit Coordinates (1gfw.pdb4.gz) 81 Kb
  • Biological Unit Coordinates (1gfw.pdb5.gz) 81 Kb
  • LPC: Ligand-Protein Contacts for 1GFW
  • CSU: Contacts of Structural Units for 1GFW
  • Likely Quarternary Molecular Structure file(s) for 1GFW
  • Retrieve 1GFW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1GFW from S2C, [Save to disk]
  • View 1GFW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1GFW
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1GFW, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1gfw.1, region A:,B [Jmol] [rasmolscript] [script source]
  • Fold representative 1gfw from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1gfw] [1gfw_B] [1gfw_A]
  • SWISS-PROT database: [P42574]
  • Domain organization of [CASP3_HUMAN] by SWISSPFAM
  • Domain found in 1GFW: [CASc ] by SMART
  • Other resources with information on 1GFW
  • Community annotation for 1GFW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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